DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lab and tin

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_524433.1 Gene:tin / 42536 FlyBaseID:FBgn0004110 Length:416 Species:Drosophila melanogaster


Alignment Length:541 Identity:128/541 - (23%)
Similarity:180/541 - (33%) Gaps:197/541 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 HPSSHSPADSYYESDSVHSYYATAAVATVAPPSNSSPITAANASATSNTQQQQQQAAIISSENGM 206
            |....:.:..||:      :|      |.:|    ||.:..||.|.:.|.               
  Fly     4 HHQQQAQSGGYYD------HY------TQSP----SPGSLTNADALNTTP--------------- 37

  Fly   207 MYTNLDCMYPTAQAQAPVHGYAGQIEEKYAAVLHASYAPGMVLEDQDPMM----QQATQS----- 262
             ::..|.:....|.:| ..|..|.|:.  ||...|.:|.|   |.|:|..    ||..||     
  Fly    38 -FSVKDILNMVNQTEA-YEGSYGHIDG--AATASALFAAG---EYQNPHQYLNHQQHQQSELPIP 95

  Fly   263 -QMWHHQQHLAGSYALDAMDSL---------------GMHAHM--HHGLPHGHLGNLANNPHQQQ 309
             |..|||....|:....::..|               ||.|||  ||   |||            
  Fly    96 QQQLHHQHLDDGATTSSSLSPLLPPPPHQLYGGYQDYGMPAHMFQHH---HGH------------ 145

  Fly   310 PQVQQQQQQPHQQPQHPQN------------------QSPAAHQQHHQNSVSPNGGMNRQQRG-- 354
                     |||..||..:                  |:||.:..::..|....||......|  
  Fly   146 ---------PHQSFQHSASAYNMSASQFYAGASATAYQTPATYNYNYAGSGEVYGGATPSAVGIK 201

  Fly   355 ------GVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASG 413
                  ..::|..:...::||...:..|.||....|..|.    :.|:...|          :|.
  Fly   202 SEYIPTPYVTPSPTLDLNSSAEVDSLQAPTQKLCVNPLSQ----RLMETASN----------SSS 252

  Fly   414 IASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHP 478
            :.|::            |...|.....|..|              :...|.:..||  .:|:::|
  Fly   253 LRSIY------------GSDEGAKKKDNSQV--------------TSSRSELRKNS--ISGNSNP 289

  Fly   479 NGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNET 543
                   ||.||    |.........|..|:..|:.|||..|...:|||.|.|..||..|.|:.|
  Fly   290 -------GSNSG----STKPRMKRKPRVLFSQAQVLELECRFRLKKYLTGAEREIIAQKLNLSAT 343

  Fly   544 QVKIWFQNRRMKQKKRVKEGLIPADILTQHSTSVISEKPPQQQQPQPPELQLKSQGSDLGGNELA 608
            ||||||||||.|.|:    |.|..:.:.:|                   |:|||:..|     ..
  Fly   344 QVKIWFQNRRYKSKR----GDIDCEGIAKH-------------------LKLKSEPLD-----SP 380

  Fly   609 TGAPSTPTTAMTLTAPTSKQS 629
            |..| .|.....:..||.:||
  Fly   381 TSLP-PPIPNHVMWPPTMQQS 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 28/51 (55%)
tinNP_524433.1 HOX 301..357 CDD:197696 28/55 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 59 1.000 Inparanoid score I4021
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.060

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