DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and Ubx

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_536752.1 Gene:Ubx / 42034 FlyBaseID:FBgn0003944 Length:389 Species:Drosophila melanogaster


Alignment Length:411 Identity:107/411 - (26%)
Similarity:143/411 - (34%) Gaps:126/411 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 QQATQSQMWHHQQHLAGSYALDAMDSLGMH-------AHMHHGLPHGHLGNLANNPHQQQPQVQQ 314
            :||  |..:.|.....|.    ||.|.|.|       |..:.|.|.    :|..:|:......:.
  Fly     6 EQA--SGFYGHPHQATGM----AMGSGGHHDQTASAAAAAYRGFPL----SLGMSPYANHHLQRT 60

  Fly   315 QQQQPHQQP-----QHPQNQSPAAHQQHHQN----------SVSPNGGMNRQQRGGVISPGSSTS 364
            .|..|:...     .........|::|...|          .:...||.|....||....|....
  Fly    61 TQDSPYDASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGGGGGGGGGGAG 125

  Fly   365 SSTSA--SNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLD 427
            .:..|  :||.:.|:...                  :|.|....|..|:   |...|.::.|.||
  Fly   126 GTGGAGNANGGNAANANG------------------QNNPAGGMPVRPS---ACTPDSRVGGYLD 169

  Fly   428 MC-------RGGGGGG----SGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSA----AAAGSAH 477
            ..       |||..||    || |||..| |.....|:.|..:..|:....:.|    |||.|.|
  Fly   170 TSGGSPVSHRGGSAGGNVSVSG-GNGNAG-GVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLH 232

  Fly   478 P--------------------------------NGMGVGLG-------SGSGLSSCSLSSNTNNS 503
            .                                .|:...:|       :||.|.....::.....
  Fly   233 QASNHTFYPWMAIAGECPEDPTKSKIRSDLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRR 297

  Fly   504 GRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGLIPAD 568
            ||..:|..|..|||||||.|.||||.||||:|:.|.|.|.|:||||||||||.||.::       
  Fly   298 GRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKKEIQ------- 355

  Fly   569 ILTQHSTSVISEKPPQQQQPQ 589
                    .|.|...|::|.|
  Fly   356 --------AIKELNEQEKQAQ 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 34/52 (65%)
UbxNP_536752.1 Homeodomain 296..352 CDD:459649 35/55 (64%)

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