DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lab and Antp

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_996167.1 Gene:Antp / 40835 FlyBaseID:FBgn0260642 Length:378 Species:Drosophila melanogaster


Alignment Length:605 Identity:143/605 - (23%)
Similarity:167/605 - (27%) Gaps:312/605 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SSMYGNHPHHHHPHANAYDGYSTTTASAANASSY--------------FAPQQHQPHLQ---LQQ 52
            :|..|...||.|     |.|...|...|.....|              |.|....|:..   :.|
  Fly    17 NSYMGADMHHGH-----YPGNGVTDLDAQQMHHYSQNANHQGNMPYPRFPPYDRMPYYNGQGMDQ 76

  Fly    53 QQQHQHLQQPQQHLTYNGYESSSPGNYYPQQQ--AQLTPPPTSSHQVVQ--QHQQQQQAQQ---- 109
            |||||...:|..       .||..|...||.|  .||..|.....|..|  |:||||||||    
  Fly    77 QQQHQVYSRPDS-------PSSQVGGVMPQAQTNGQLGVPQQQQQQQQQPSQNQQQQQAQQAPQQ 134

  Fly   110 -QQLYPHSHLFSPSAAEYGITTSTTTGNPGTPLHPSSHSPADSYYESDSVHSYYATAAVATVAPP 173
             ||..|.            :|...|        ||                              
  Fly   135 LQQQLPQ------------VTQQVT--------HP------------------------------ 149

  Fly   174 SNSSPITAANASATSNTQQQQQQAAIISSENGMMYTNLDCMYPTAQAQAPVHGYAGQIEEKYAAV 238
                             ||||||..:               |.:.:.||.|.|.           
  Fly   150 -----------------QQQQQQPVV---------------YASCKLQAAVGGL----------- 171

  Fly   239 LHASYAPGMVLEDQDPMMQQATQSQMWHHQQHLAGSYALDAMDSLGMHAHMHHGLPHGHLGNLAN 303
                   |||.|...|.:                    :|.|....|:|.|  .||| |:|    
  Fly   172 -------GMVPEGGSPPL--------------------VDQMSGHHMNAQM--TLPH-HMG---- 202

  Fly   304 NPHQQQPQVQQQQQQPHQQPQHPQNQ----------SPAAHQQHHQNSVSPNGGMNRQQRG---- 354
                                 |||.|          ....||.||      |.||.:||.|    
  Fly   203 ---------------------HPQAQLGYTDVGVPDVTEVHQNHH------NMGMYQQQSGVPPV 240

  Fly   355 -----GVISPGSSTSSSTSASNGAHPASTQSKSPNHSSS---IPTYKWMQLKRNVPKPQAPKLPA 411
                 |::..|...........|.|  :..|::||..||   .|.|.||:               
  Fly   241 GAPPQGMMHQGQGPPQMHQGHPGQH--TPPSQNPNSQSSGMPSPLYPWMR--------------- 288

  Fly   412 SGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSA 476
                        .|...|:                                              
  Fly   289 ------------SQFGKCQ---------------------------------------------- 295

  Fly   477 HPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLN 541
                                   ....||..:|..|..||||||||||||||.||||||:.|.|.
  Fly   296 -----------------------ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 337

  Fly   542 ETQVKIWFQNRRMKQKKRVK 561
            |.|:||||||||||.||..|
  Fly   338 ERQIKIWFQNRRMKWKKENK 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 37/51 (73%)
AntpNP_996167.1 KLF1_2_4_N <161..306 CDD:425360 50/314 (16%)
Homeobox 301..354 CDD:395001 37/52 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
43.810

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