DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and pb

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_476669.3 Gene:pb / 40826 FlyBaseID:FBgn0051481 Length:782 Species:Drosophila melanogaster


Alignment Length:299 Identity:95/299 - (31%)
Similarity:117/299 - (39%) Gaps:105/299 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 GGGGGSGVGNGPVGVGGN-GSPGIG--GVLSVQNSLIMAN---------SAAAA----------- 473
            ||.||:||..|..|||.: |.||||  ||..|. |::|.|         ||..|           
  Fly    38 GGCGGAGVVGGVGGVGVSVGQPGIGQQGVPPVP-SVLMVNKMTPNCDKRSADTAYWMTASEGGFI 101

  Fly   474 ------------------------GSAHPNGMG------VGLGSG----------SGLSS----- 493
                                    ||....|:|      ||:|.|          .|:.|     
  Fly   102 NSQPSMAEFLNHLSPESPKIGTPVGSGAIGGVGVNVNVNVGVGVGYPVGVVPQTPDGMDSVPEYP 166

  Fly   494 -------CSLSSNTNNSG-----------------RTNFTNKQLTELEKEFHFNRYLTRARRIEI 534
                   ...|||.||.|                 ||.:||.||.|||||||||:||.|.|||||
  Fly   167 WMKEKKTSRKSSNNNNQGDNSITEFVPENGLPRRLRTAYTNTQLLELEKEFHFNKYLCRPRRIEI 231

  Fly   535 ANTLQLNETQVKIWFQNRRMKQKKRV---------KEGLIPADILTQHSTSVISEKPPQQQQPQP 590
            |.:|.|.|.|||:||||||||.|::.         |:.|...|   ..|.|..:.|...|....|
  Fly   232 AASLDLTERQVKVWFQNRRMKHKRQTLSKTDDEDNKDSLKGDD---DQSDSNSNSKKSCQGCELP 293

  Fly   591 PELQLKSQGSDLGGNELATGAPSTPTTAMTLTAPTSKQS 629
            .:....|..:..|.|.....|.:...:|..||..:|.::
  Fly   294 SDDIPDSTSNSRGHNNNTPSATNNNPSAGNLTPNSSLET 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 38/51 (75%)
pbNP_476669.3 COG5576 168..274 CDD:227863 47/105 (45%)
Homeobox 202..254 CDD:278475 38/51 (75%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439799
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 1 0.900 - - E2759_KOG0489
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D858478at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.750

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