DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and CG4328

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster


Alignment Length:219 Identity:49/219 - (22%)
Similarity:75/219 - (34%) Gaps:74/219 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 QQQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNR------QQR----------GGVISPGS 361
            ||||....|.||                    .||:|:      .:|          ..|::.|.
  Fly    20 QQQQLGAGQLPQ--------------------TGGLNQLLLLNGNERMLTTPTTAATSVVVAAGR 64

  Fly   362 STSSSTSASNGAHPAS----TQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQM 422
            |.|:....::....||    ......||:||..:                  .:|...|..:..:
  Fly    65 SASTKAGVAHNDKMASVSRTVNGSCSNHNSSNSS------------------SSSSTNSSSNMAI 111

  Fly   423 NGQ-LDMCRGGGGG-GSGVGNGP----------VGVGGNGSPGIGGVLSVQNSLIMANS-AAAAG 474
            |.| :.|..|.|.| |:|.|:||          :.:|.....|:.|..:.......:|: .|..|
  Fly   112 NKQPMGMGPGTGTGMGTGTGHGPGPPNHTHCNRITLGECSLNGMDGFATPAAPPSASNTPQAPLG 176

  Fly   475 SAHPNGMGVGLG---SGSGLSSCS 495
            .|..:|||:.||   :...||.|:
  Fly   177 MASNSGMGMELGLAMASPQLSQCA 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 1/2 (50%)
LIM 259..313 CDD:413332
COG5576 <332..439 CDD:227863
HOX 341..393 CDD:197696
Blue background indicates that the domain is not in the aligned region.

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