DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lab and tup

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_476775.1 Gene:tup / 35147 FlyBaseID:FBgn0003896 Length:534 Species:Drosophila melanogaster


Alignment Length:438 Identity:90/438 - (20%)
Similarity:143/438 - (32%) Gaps:136/438 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 QQHQQQQQAQQQQLYPHSHLFSPSAAEYGITTSTTTGNPGTPLHPSSHSP-----ADSYYESDSV 158
            :.|...:::.|..|       :.|:.|.....|::..| .|.|..::||.     :||..||.|.
  Fly   169 EDHDVLEKSSQSSL-------TSSSVESNNNISSSNNN-NTNLSNNNHSSELGSMSDSGSESGSH 225

  Fly   159 HSYYATAAVATVAP--PSNSSPI---------------TAANASATSNTQQQQQQAAIISSENGM 206
            .|      :....|  ||:..|.               |..||:...:...::|...:.|....:
  Fly   226 KS------IRDKRPSGPSDGKPTRVRTVLNEKQLHTLRTCYNANPRPDALMKEQLVEMTSLSPRV 284

  Fly   207 M---YTNLDCMYPTAQAQAPVHGYAGQIEEK-------YAAVLHASYAPGMVLEDQDPMMQQATQ 261
            :   :.|..|.......|..:     |::::       |.|:..........:....|:..|...
  Fly   285 IRVWFQNKRCKDKKKTIQMKL-----QMQQEKEGRKLGYGAMQGIPMIASSPVRHDSPLNLQGLD 344

  Fly   262 SQMWHHQQHLAGSYALDA-MDSLG---------------MHAHMHHGLPHGHLGNLANNPHQQQP 310
            .|.:.........:||.| :||.|               ||.:..:|:|     .|..:||    
  Fly   345 VQTYQPPWKALSDFALHADLDSNGAINTHTPAFQQLVNQMHGYDLNGMP-----ILPPHPH---- 400

  Fly   311 QVQQQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSASNGAHP 375
                  ..|.|.|.| |:..|.....:|||. .||     ||.|     |||..|..::.:  ||
  Fly   401 ------SHPAQGPPH-QHPPPPGGPHNHQNQ-QPN-----QQPG-----GSSLDSGITSHH--HP 445

  Fly   376 ASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVG 440
            .||.|             ::....:..|.:....|:|.                 .....|:.:.
  Fly   446 DSTDS-------------YVTYLESDDKSKLALTPSSS-----------------SSASAGTSIS 480

  Fly   441 NGPVGVGGNGSPGIGGVLSVQNSLIMANSAA----------AAGSAHP 478
            :.|.|||..|...:||...|....::||.:|          ..|||.|
  Fly   481 SPPSGVGAGGGGAVGGGSGVLGLGVVANQSATEQLMQMLQKVTGSASP 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649
tupNP_476775.1 LIM1_Isl 54..108 CDD:188752
LIM2_Isl 116..171 CDD:188760 0/1 (0%)
HOX 241..297 CDD:197696 8/55 (15%)
Blue background indicates that the domain is not in the aligned region.

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