DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxb4a

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_571193.1 Gene:hoxb4a / 30340 ZFINID:ZDB-GENE-990415-105 Length:246 Species:Danio rerio


Alignment Length:314 Identity:78/314 - (24%)
Similarity:110/314 - (35%) Gaps:125/314 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   311 QVQQQQQQPHQQPQH--PQNQSPAAHQQ--HHQNSVSPNGGMNRQQRGG----VISPGS----ST 363
            :..|....|...|.:  .|.|.|:...:  :||.|...:...:..|..|    ||||..    :|
Zfish    22 EYSQSDYLPSHSPDYYSAQRQDPSFQHESIYHQRSGCADPPYSSCQGPGQPAAVISPRGHVLPTT 86

  Fly   364 SSSTSASNGAH----------PASTQSKSPNHSSSIPT------YKWMQLKRNVPKPQAPKLPAS 412
            :.||.....:|          ||..|:.:..::|::.:      |.||:                
Zfish    87 ALSTPLPEPSHHCDSVTPSPPPACGQTPTSQNTSTVSSRKDPVVYPWMK---------------- 135

  Fly   413 GIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAH 477
                                                                          ..|
Zfish   136 --------------------------------------------------------------KVH 138

  Fly   478 PNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNE 542
            .|           :.|.:.|.......||.:|.:|:.|||||||:||||||.||:|||:||.|:|
Zfish   139 VN-----------IVSPNYSGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSE 192

  Fly   543 TQVKIWFQNRRMKQKKRVKEGLIPADILTQHSTSVISEKPP-----QQQQPQPP 591
            .|:||||||||||.||..|   :|...:..:|.|..|...|     |.:...||
Zfish   193 RQIKIWFQNRRMKWKKDHK---LPNTKIRSNSASTNSSGCPTLCSNQSRASGPP 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 37/51 (73%)
hoxb4aNP_571193.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..125 23/101 (23%)
Antp-type hexapeptide 130..135 2/4 (50%)
Homeobox 154..207 CDD:278475 37/52 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 210..246 9/37 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.900

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