DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxb3a

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:382 Identity:100/382 - (26%)
Similarity:131/382 - (34%) Gaps:144/382 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 MQQATQSQMWHHQQHLAGSYALDAMDSLGMHAHMHHGLPHGHLGNLANNPHQQQP-QVQQQQQQP 319
            ||:.|    ::....|.|.|:....:..|..|.........||    ...:|:.. .:|......
Zfish     1 MQKTT----YYDNSTLFGGYSYQGANGFGYDAPAPAFQNSAHL----EGDYQRSACSLQSLGTSA 57

  Fly   320 HQQPQHPQNQS-------PAAHQQHH--------QNSVSPNGGMNRQQRGG------VISPGSST 363
            ..||||.:.:.       |:...:||        ||:|:.......||.||      ..|.|:|.
Zfish    58 PPQPQHAKTKELNGSCMRPSLPPEHHPPPQVSPPQNTVNVAATNATQQPGGSGGGGVAGSGGTSK 122

  Fly   364 SSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDM 428
            |||.|:|...:|..|:...|          ||:..|...|.:                       
Zfish   123 SSSKSSSMATNPTLTKQIFP----------WMKESRQNTKQK----------------------- 154

  Fly   429 CRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSS 493
                                |.||          |...||:.::.|...|.|             
Zfish   155 --------------------NSSP----------SASSANAESSGGEKSPPG------------- 176

  Fly   494 CSLSSNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKK 558
                |..:...||.:|:.||.||||||||||||.|.||:|:||.|.|:|.|:||||||||||.||
Zfish   177 ----SAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKK 237

  Fly   559 RVKEGLIPADILTQHSTSVISEKPPQQQQPQPPELQLKSQGSDLGGNELATGAPSTP 615
            ..|.                                 |..||..||.. .||:|..|
Zfish   238 DQKS---------------------------------KGIGSSSGGPS-PTGSPPLP 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 37/51 (73%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135 23/83 (28%)
Antp-type hexapeptide 140..145 2/14 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 12/106 (11%)
Homeobox 184..236 CDD:278475 37/51 (73%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 11/58 (19%)
DUF4074 353..415 CDD:290032
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.900

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