DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxb1a

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_571190.2 Gene:hoxb1a / 30337 ZFINID:ZDB-GENE-990415-101 Length:316 Species:Danio rerio


Alignment Length:417 Identity:125/417 - (29%)
Similarity:148/417 - (35%) Gaps:173/417 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 YTNLDCMYPTAQAQAPVHGYAGQIEEKYAAVLHASYAPGMVLEDQDPMMQQATQSQMWHHQQHLA 272
            |.:||..:|     .|.|  .|...:.|.|. ...|..|   .:|.|     |.:....||.   
Zfish    28 YHHLDQAFP-----GPFH--TGHASDSYNAD-GRLYVGG---SNQPP-----TAAAQHQHQN--- 73

  Fly   273 GSYALDAMDSLGMHAHMHH------GLPHGHLGN-------LANNPHQQQPQVQQQQQ------- 317
                       |::||..|      ||.:|..|.       .||:.:.|.......:|       
Zfish    74 -----------GIYAHHQHQNQTGMGLTYGGTGTTSYGTQACANSDYAQHQYFINPEQDGMYYHS 127

  Fly   318 --------QPHQQPQ-----HPQNQSPAAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSA 369
                    .||....     ..|...|||..|||        |...|......|.|  |.:..||
Zfish   128 SGFSTSNASPHYGSMAGAYCGAQGAVPAAPYQHH--------GCEGQDHQRAYSQG--TYADLSA 182

  Fly   370 SNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGG 434
            |.|.. ..|....|.     .|:.||::|||.||.                             |
Zfish   183 SQGTE-KDTDQPPPG-----KTFDWMKVKRNPPKT-----------------------------G 212

  Fly   435 GGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSN 499
            ..:..|.||                 ||::                                   
Zfish   213 KVAEYGLGP-----------------QNTI----------------------------------- 225

  Fly   500 TNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGL 564
                 |||||.||||||||||||::|||||||:|||.||:||||||||||||||||||||.||||
Zfish   226 -----RTNFTTKQLTELEKEFHFSKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKREKEGL 285

  Fly   565 IPA------DILTQ--HSTSVISEKPP 583
            .||      |:..|  ||||...|..|
Zfish   286 APASSTSSKDLEDQSDHSTSTSPEASP 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 45/51 (88%)
hoxb1aNP_571190.2 Homeobox 226..278 CDD:278475 45/51 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 153 1.000 Inparanoid score I4300
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003011
OrthoInspector 1 1.000 - - otm25194
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45946
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2567
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
88.080

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