DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lab and Hoxd3

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001257967.1 Gene:Hoxd3 / 288152 RGDID:1588601 Length:432 Species:Rattus norvegicus


Alignment Length:511 Identity:122/511 - (23%)
Similarity:154/511 - (30%) Gaps:246/511 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 SYYESDSVHSYY----ATAAVATVAPPSNSSPITAANASATSNTQQQQQQAAIISSENGMMYTNL 211
            :|||:..:...|    ||.|.....|.....|..|||                          :|
  Rat    21 AYYENPGLFGGYGYSKATDAYGYSTPHQPYPPPAAAN--------------------------SL 59

  Fly   212 DCMYPTA----QAQAPVHGYAGQIEEKYAAVLHASYAPGMVLEDQDPMMQQATQSQMWHHQQHLA 272
            |..||::    |:.||:.                  ||.                   |....|.
  Rat    60 DSDYPSSACSIQSSAPLR------------------APA-------------------HKGAELN 87

  Fly   273 GSYALDAMDSLGMHAHMHHGLPHGHLGNLANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQH 337
            ||.             |..|     .||........||.....:|||.|.|..|....|:     
  Rat    88 GSC-------------MRPG-----TGNSQGGGGGNQPPGLNSEQQPPQPPPPPPTLPPS----- 129

  Fly   338 HQNSVSPNGGM-NRQQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNV 401
              :..:|..|: .::.:||   |.:|:||||.:..                   .:.||:..|  
  Rat   130 --SPTNPGSGVPAKKTKGG---PNASSSSSTISKQ-------------------IFPWMKESR-- 168

  Fly   402 PKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIM 466
                                                                       |||. .
  Rat   169 -----------------------------------------------------------QNSK-Q 173

  Fly   467 ANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARR 531
            .||.|.              ||......|.....:...||.:|:.||.||||||||||||.|.||
  Rat   174 KNSCAT--------------SGENCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRR 224

  Fly   532 IEIANTLQLNETQVKIWFQNRRMKQKKRVK-EGLIPADILTQHSTSVISEKPPQQQQPQ--PPEL 593
            :|:||.|.|.|.|:||||||||||.||..| :|::       ||        |..|.|:  ||  
  Rat   225 VEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGIL-------HS--------PAGQSPERSPP-- 272

  Fly   594 QLKSQGSDLGGNE--------------LATGAPSTPTTAMT---------LTAPTS 626
                    |||..              ||..|||.|..|.:         .|||.|
  Rat   273 --------LGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLS 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 37/52 (71%)
Hoxd3NP_001257967.1 Homeodomain 195..251 CDD:459649 37/55 (67%)
DUF4074 369..430 CDD:463833
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.