DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and Vax1

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_033527.1 Gene:Vax1 / 22326 MGIID:1277163 Length:338 Species:Mus musculus


Alignment Length:200 Identity:60/200 - (30%)
Similarity:76/200 - (38%) Gaps:69/200 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   484 GLGSGSGLSSCSLSSNTNNSG----------------------------------RTNFTNKQLT 514
            |..||||.|.....|.:|:|.                                  ||:||.:||.
Mouse    49 GAFSGSGASEDCNKSKSNSSADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLY 113

  Fly   515 ELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKK-RVKEGLIPADILTQHSTSVI 578
            .||.||...:|:....|.|:|..|.|:|||||:||||||.|||| :.|:..:         .||:
Mouse   114 RLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSEL---------RSVV 169

  Fly   579 SE-----------------KPPQQQQPQPPELQLKSQGSDLGGNEL-------ATGAPSTPTTAM 619
            ||                 .||......|| ....:.||.|.|..|       |.|:.:....|.
Mouse   170 SETAATCSVLRLLEQGRLLSPPGLPALLPP-CATGALGSALRGPSLPALGAGAAAGSAAAAAAAA 233

  Fly   620 TLTAP 624
            ..|||
Mouse   234 AATAP 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 29/52 (56%)
Vax1NP_033527.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..69 8/19 (42%)
Homeodomain 101..157 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..269 59/199 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 318..338
Blue background indicates that the domain is not in the aligned region.

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