DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and Hoxd8

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_032302.2 Gene:Hoxd8 / 15437 MGIID:96209 Length:289 Species:Mus musculus


Alignment Length:417 Identity:102/417 - (24%)
Similarity:132/417 - (31%) Gaps:160/417 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 YAGQIEEKY--AAVLHASYAPGMVLEDQDPMMQQATQSQMWHHQQHLAGSYALDAMDSLGMHAHM 289
            :...:..||  ||...|:.|.....|..:|.....      |....::|.:|.    :|.::.:.
Mouse     5 FVNPLYSKYKAAAAAAAAAAAAAAGEAINPTYYDC------HFAPEVSGRHAA----ALQLYGNS 59

  Fly   290 HHGLPHGHLGNLANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNRQQRG 354
            ..|.||.|       ||            ||..|..|    |..            ||      |
Mouse    60 AAGFPHAH-------PH------------PHPHPSPP----PGC------------GG------G 83

  Fly   355 GVISPG-----SSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGI 414
            |...||     :...|.|:|...|.|       |.|                |.|..|..|..||
Mouse    84 GGPGPGQDYFHAGAGSPTAAYQAAPP-------PPH----------------PPPPPPPPPCGGI 125

  Fly   415 ------ASMHDY-----------QMNGQLDM---CRGGGGGGSGVGNGPVGVGGNGSPGIGGVLS 459
                  |..:.|           |...:|..   |:...|   .:|..|..:..:.||       
Mouse   126 ACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSG---NIGEDPDHLNQSSSP------- 180

  Fly   460 VQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNR 524
             ..........||.|                          ...||..::..|..||||||.||.
Mouse   181 -SQMFPWMRPQAAPG--------------------------RRRGRQTYSRFQTLELEKEFLFNP 218

  Fly   525 YLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGLIPADILTQHSTSVISEKPPQQQQPQ 589
            ||||.||||:::||.|.|.||||||||||||.||...:...||             ..|:.:...
Mouse   219 YLTRKRRIEVSHTLALTERQVKIWFQNRRMKWKKENNKDKFPA-------------SRPEAKDGD 270

  Fly   590 PPELQLKSQGSDLGGNELATGAPSTPT 616
            |.:        ::.|.| ..||...||
Mouse   271 PKK--------EVSGLE-EDGAEGCPT 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 34/52 (65%)
Hoxd8NP_032302.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..125 28/126 (22%)
COG5576 139..272 CDD:227863 51/182 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..184 5/32 (16%)
Antp-type hexapeptide 183..188 0/4 (0%)
Homeodomain 196..252 CDD:459649 35/55 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..289 11/59 (19%)

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