DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and Hoxc8

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_034596.1 Gene:Hoxc8 / 15426 MGIID:96198 Length:242 Species:Mus musculus


Alignment Length:408 Identity:83/408 - (20%)
Similarity:120/408 - (29%) Gaps:208/408 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 DCMYP--TAQAQAPVHGYAGQIEEKYAAVLHASYAPGMVLEDQDPMMQQATQSQMWHHQQHLAGS 274
            ||.:|  ..::.|.|:|..|.             |||         .|.|:     ||.|..   
Mouse    25 DCRFPQSVGRSHALVYGPGGS-------------APG---------FQHAS-----HHVQDF--- 59

  Fly   275 YALDAMDSLGMHAHMHHGLPHGHLGNLANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQHHQ 339
                          .|||     ...::|:.:||.|                             
Mouse    60 --------------FHHG-----TSGISNSGYQQNP----------------------------- 76

  Fly   340 NSVSPNGGMNR---------------QQRGGVIS-PGSSTSSSTSASNGAHPASTQSKSPNHSSS 388
            .|:|.:|..::               ||...|:. |...:|::|::|.|      |.....:||.
Mouse    77 CSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEG------QGHLNQNSSP 135

  Fly   389 IPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPG 453
            ...:.||       :|.||                                              
Mouse   136 SLMFPWM-------RPHAP---------------------------------------------- 147

  Fly   454 IGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEK 518
                                                          ...|||..::..|..||||
Mouse   148 ----------------------------------------------GRRSGRQTYSRYQTLELEK 166

  Fly   519 EFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGLIPADILTQHSTSVISEKPP 583
            ||.||.||||.||||:::.|.|.|.||||||||||||.||...:..:|.    ......:.|:..
Mouse   167 EFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPG----ARDEEKVEEEGN 227

  Fly   584 QQQQPQPPELQLKSQGSD 601
            ::::.:..|   |.:..|
Mouse   228 EEEEKEEEE---KEENKD 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 33/52 (63%)
Hoxc8NP_034596.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..154 14/144 (10%)
Antp-type hexapeptide 138..143 2/11 (18%)
Homeodomain 150..206 CDD:459649 35/55 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..242 5/42 (12%)

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