DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and Hoxb9

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_032296.2 Gene:Hoxb9 / 15417 MGIID:96190 Length:250 Species:Mus musculus


Alignment Length:254 Identity:71/254 - (27%)
Similarity:97/254 - (38%) Gaps:54/254 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   338 HQNSVSPNGGMNRQQRGGVISPGSS-----TSSSTSASNGAHPASTQSKSPNHSSSIPTY----- 392
            |::..:|.......|......||.:     .|.|.........||....||:.|.|:|:.     
Mouse    18 HESEDAPPAKFPSGQYANPRQPGHAEHLDFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYL 82

  Fly   393 --------------KWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGP 443
                          .|::     |.|:|...|..|.|::....:.|                 .|
Mouse    83 QPQGAPAAESRYLRTWLE-----PAPRAEAAPGQGQAAVKAEPLLG-----------------AP 125

  Fly   444 VGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSN-----TNNS 503
            ..:...|:|......|.....:::|..|..|.   |.:..|..........:.|:|     ::..
Mouse   126 GELLKQGTPEYSLETSAGREAVLSNQRAGYGD---NKICEGSEDKERPDQTNPSANWLHARSSRK 187

  Fly   504 GRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKE 562
            .|..:|..|..||||||.||.||||.||.|:|..|.|:|.||||||||||||.||..||
Mouse   188 KRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKE 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 34/52 (65%)
Hoxb9NP_032296.2 Hox9_act 1..172 CDD:461369 31/178 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..48 4/26 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 160..182 3/21 (14%)
Homeodomain 186..242 CDD:459649 34/55 (62%)

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