DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and Hoxb8

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_034591.1 Gene:Hoxb8 / 15416 MGIID:96189 Length:243 Species:Mus musculus


Alignment Length:284 Identity:76/284 - (26%)
Similarity:100/284 - (35%) Gaps:99/284 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   351 QQRGG----VISPGSSTSSSTSASNGAHPASTQS--KSPNHSSSIPTYKWMQLKRNVPKPQAPKL 409
            |..||    |..|.|..|..       ||:..|.  ..|:..|:.|                   
Mouse    30 QDLGGRPTVVYGPSSGGSFQ-------HPSQIQEFYHGPSSLSTAP------------------- 68

  Fly   410 PASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPG-IGGVLSVQNSLIMANSAAAA 473
                      ||.|                   |..|..:|.|| ..|...:|...:.       
Mouse    69 ----------YQQN-------------------PCAVACHGDPGNFYGYDPLQRQSLF------- 97

  Fly   474 GSAHPNGMGVG---LGSGSGLSSCSLSSNTNNS------------------GRTNFTNKQLTELE 517
            |:..|:.:...   |.:.|||...:..|..:.|                  ||..::..|..|||
Mouse    98 GAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELE 162

  Fly   518 KEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEGLIPADILTQHSTSVISEKP 582
            |||.||.||||.||||:::.|.|.|.||||||||||||.||...:...|:....|...    ||.
Mouse   163 KEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEEL----EKE 223

  Fly   583 PQQQQPQPPELQLKSQGSDLGGNE 606
            ..::.|:..|     ||....|::
Mouse   224 KLERAPETAE-----QGDAQKGDK 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 33/52 (63%)
Hoxb8NP_034591.1 Antp-type hexapeptide 134..139 0/4 (0%)
Homeodomain 147..203 CDD:459649 34/55 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..243 10/49 (20%)

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