DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lab and Hoxa3

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:514 Identity:122/514 - (23%)
Similarity:160/514 - (31%) Gaps:239/514 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 SYYESDSVHSYYATAAVATVAPPSNSSPITAANASATSNTQQQQQQAAIISSENGMMYTNLDCMY 215
            :||:|.:::..|               |..|||..|.:.:||....:|.:.:: |:.|..     
Mouse     5 TYYDSSAIYGGY---------------PYQAANGFAYNASQQPYAPSAALGTD-GVEYHR----- 48

  Fly   216 PTAQAQAPVHGYAGQIEEKYAAVLHASYAPGMVLEDQDPMMQQATQSQMWHHQQHLAGSYALDAM 280
            |....|:|.                                                        
Mouse    49 PACSLQSPA-------------------------------------------------------- 57

  Fly   281 DSLGMHAHMHHGLPHGHLGNLANNPHQ-----------QQPQVQQQQQQPHQQPQHPQNQSPAAH 334
             |.|.|...|. |....|..|:..|.|           ..||......||.|.|..|...:|||.
Mouse    58 -SAGGHPKTHE-LSEACLRTLSGPPSQPPGLGEPPLPPPPPQAAPPAPQPPQPPPQPPAPTPAAP 120

  Fly   335 QQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPT-----YKW 394
                                   .|.||.|...||::...|||| :|||..:|  ||     :.|
Mouse   121 -----------------------PPPSSVSPPQSANSNPTPAST-AKSPLLNS--PTVGKQIFPW 159

  Fly   395 MQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLS 459
            |:..|...|.:.                              ||..:|....|....||      
Mouse   160 MKESRQNTKQKT------------------------------SGSSSGESCAGDKSPPG------ 188

  Fly   460 VQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFNR 524
                  .|:|..|                                ||.:|:.||.||||||||||
Mouse   189 ------QASSKRA--------------------------------RTAYTSAQLVELEKEFHFNR 215

  Fly   525 YLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVK-EGLIPAD-----------------ILT 571
            ||.|.||:|:||.|.|.|.|:||||||||||.||..| :|::.:.                 :.:
Mouse   216 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNS 280

  Fly   572 QHS--TSVISE--------KPPQQ----------------QQPQPPELQLKSQGSDLGG 604
            .||  .||..|        ||||.                ..|.||:.:..:.||..||
Mouse   281 MHSLVNSVPYEPQSPPPFSKPPQGAYGLPPASYPAPLPSCAPPPPPQKRYTAAGSGAGG 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 37/51 (73%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 27/102 (26%)
Antp-type hexapeptide 156..161 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 11/107 (10%)
COG5576 <182..309 CDD:227863 56/170 (33%)
Homeobox 196..249 CDD:365835 37/52 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 20/92 (22%)
DUF4074 378..441 CDD:372548
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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