DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and Gsx2

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_573555.1 Gene:Gsx2 / 14843 MGIID:95843 Length:305 Species:Mus musculus


Alignment Length:298 Identity:76/298 - (25%)
Similarity:97/298 - (32%) Gaps:124/298 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 AHMHHGLP---------------------HGHLGNLANNPHQQQPQVQQQQQQPHQQPQHPQNQS 330
            :|:|...|                     .|..|.|.....|..|.....|..|.....|..:..
Mouse    67 SHLHSSRPPAGAGGGATGTAGAAVAGGGVAGGTGALPLLKSQFSPAPGDAQFCPRVSHAHHHHHP 131

  Fly   331 PAAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHS--SSIPTYK 393
            |..|..|||          .||      |||:.:::.:|:..|..|:......:|:  .:..|| 
Mouse   132 PQHHHHHHQ----------PQQ------PGSAAAAAAAAAAAAAAAAALGHPQHHAPVCAATTY- 179

  Fly   394 WMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVL 458
                  |:..|:          ..|...|            |||..                   
Mouse   180 ------NMSDPR----------RFHCLSM------------GGSDT------------------- 197

  Fly   459 SVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNFTNKQLTELEKEFHFN 523
                            |..|||..:                     ||.||:.||.|||:||..|
Mouse   198 ----------------SQVPNGKRM---------------------RTAFTSTQLLELEREFSSN 225

  Fly   524 RYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVK 561
            .||:|.||||||..|.|:|.||||||||||:|.||..|
Mouse   226 MYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 35/51 (69%)
Gsx2NP_573555.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 115..151 13/51 (25%)
Homeobox 207..259 CDD:278475 35/51 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..305 3/5 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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