DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lab and gbx1

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_777286.1 Gene:gbx1 / 142985 ZFINID:ZDB-GENE-020117-2 Length:316 Species:Danio rerio


Alignment Length:109 Identity:46/109 - (42%)
Similarity:60/109 - (55%) Gaps:14/109 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   459 SVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSL----SSNTNNSGRTNFTNKQLTELEKE 519
            |...|....|:.|:|...         |...|.|..:|    |:..:...||.||::||.|||||
Zfish   177 SENESFSDGNTCASASQK---------GKLKGGSQDALPPGGSAGKSRRRRTAFTSEQLLELEKE 232

  Fly   520 FHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKEG 563
            ||..:||:...|.:||:.|:|:|.||||||||||.|. ||:|.|
Zfish   233 FHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW-KRIKAG 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 32/51 (63%)
gbx1NP_777286.1 Homeobox 217..270 CDD:278475 32/53 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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