DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and CDX2

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_011533177.1 Gene:CDX2 / 1045 HGNCID:1806 Length:321 Species:Homo sapiens


Alignment Length:389 Identity:96/389 - (24%)
Similarity:139/389 - (35%) Gaps:125/389 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 SYALDAMDSLGMHAHMHHGLPHGHLG-NLANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQH 337
            ||.||...|:...:..|.|      | |||.......|      |.|.....|....:.||....
Human     4 SYLLDKDVSMYPSSVRHSG------GLNLAPQNFVSPP------QYPDYGGYHVAAAAAAAANLD 56

  Fly   338 HQNSVSPN-----GGMNRQQRGGVISPGSSTSSSTSAS---NGAHPASTQSKS------------ 382
            ...|..|:     |...|:...| .:||.:.:::.:.:   ||..||:....|            
Human    57 SAQSPGPSWPAAYGAPLREDWNG-YAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH 120

  Fly   383 --PNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVG 445
              |:|.::.|:.                  |||:...                     :..||.|
Human   121 HHPHHPAAAPSC------------------ASGLLQT---------------------LNPGPPG 146

  Fly   446 VGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGM------------GVGLGSGSGLS-SCSLS 497
            ..                     :.|||....|.|.            ...|||.:..| |.::.
Human   147 PA---------------------ATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQALTSPSSTVK 190

  Fly   498 SNTNNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKKRVKE 562
            :.|.:..|..:|:.|..|||||||::||:|..|:.|:|.||.|:|.||||||||||.|::|..|:
Human   191 TRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERKINKK 255

  Fly   563 GLIPADILTQHSTSVISEKPPQQQQPQPPELQLKSQGSDLGGNELATGAPSTPTTAMTLTAPTS 626
            .|....   |.........|||..||||..|:             :...|.:|.:::..:.|.|
Human   256 KLQQQQ---QQQPPQPPPPPPQPPQPQPGPLR-------------SVPEPLSPVSSLQASVPGS 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 31/52 (60%)
CDX2XP_011533177.1 Caudal_act 13..179 CDD:461413 39/238 (16%)
Homeodomain 196..251 CDD:459649 31/54 (57%)

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