DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and mnx1

DIOPT Version :10

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_002935225.2 Gene:mnx1 / 100496534 XenbaseID:XB-GENE-919890 Length:338 Species:Xenopus tropicalis


Alignment Length:302 Identity:82/302 - (27%)
Similarity:122/302 - (40%) Gaps:90/302 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   359 PGSSTS--------SSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRNVPKPQAPK----LPA 411
            |.|.||        ||:|.||...|.|      .|:.|        |:.:.|.|  |:    :|.
 Frog    18 PKSQTSPLALVTSLSSSSLSNSGSPPS------EHTDS--------LRTDTPSP--PRTCGLVPK 66

  Fly   412 SGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNGSPGIGGVLSVQNSLIMANSAAA-AGS 475
            .|..|.|.:.:|                   .:.:....:|||.......:.:...::||| |..
 Frog    67 PGFLSSHQHPIN-------------------MMALHPQAAPGIPPQALYGHPMYSYSAAAALAAG 112

  Fly   476 AHP-------------------NGMGVGLG----------SGSG-----LSSCSLSSNTNNSG-- 504
            .||                   :.:.:..|          |.:|     ::..:..:.:|..|  
 Frog   113 QHPALSYPYPQMQGAHHAHHPVDPIKISAGTFQLDQWLRASTAGMMLPKMADFNSQAQSNLLGKC 177

  Fly   505 ---RTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQK--KRVKEGL 564
               ||.||::||.|||.:|..|:||:|.:|.|:|.:|.|.||||||||||||||.|  |:.||..
 Frog   178 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQA 242

  Fly   565 I-PADILTQHSTSVISEKPPQQQQPQPPELQLKSQGSDLGGN 605
            : .|:...:.......||.|::.|.......|..:|..:.||
 Frog   243 VQDAEKQQRAGKGSCEEKCPEELQEDKNSYHLHPRGDPIKGN 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeodomain 505..558 CDD:459649 34/54 (63%)
mnx1XP_002935225.2 Homeodomain 178..234 CDD:459649 33/55 (60%)

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