DRSC/TRiP Functional Genomics Resources

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Protein Alignment lab and hoxc4

DIOPT Version :9

Sequence 1:NP_476613.1 Gene:lab / 40817 FlyBaseID:FBgn0002522 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_002936684.1 Gene:hoxc4 / 100486039 XenbaseID:XB-GENE-967141 Length:297 Species:Xenopus tropicalis


Alignment Length:398 Identity:88/398 - (22%)
Similarity:130/398 - (32%) Gaps:168/398 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 QQAAIISSENGMMYTN-LDCMYPTAQAQAPVHGYAGQIEEKYAAVLHASYAPGMVLEDQDPMMQQ 258
            |:..|:||.  :|.:| :|..:|      |...|:   :..|.    ..::|......:||..| 
 Frog    31 QKLMIMSSY--LMDSNYIDPKFP------PCEEYS---QNNYI----PEHSPEYYSRSRDPAFQ- 79

  Fly   259 ATQSQMWHHQ----------QHLAGSYALDAMDSLGMHAHMHHGLPHGHLGNLANNPHQQQPQVQ 313
                   |||          :......::.|..:...|..:|            ..|......|.
 Frog    80 -------HHQDLYPPRTAYPERQFSCASIQAPGNPATHPRLH------------GQPQSNHNLVG 125

  Fly   314 QQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNRQQRGGVISPGSSTSSSTSASNGAHPAST 378
            :.|...|..|....|.|.:                         ||..:.::.|.|....||.:|
 Frog   126 KSQLCEHPTPSLASNSSSS-------------------------SPSPAPTACTQAPTSEHPTNT 165

  Fly   379 QSKSPNHSSSIPTYKWMQLKRNVPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGP 443
            .||.|      ..|.||:                   .:|                         
 Frog   166 ASKQP------IVYPWMK-------------------KIH------------------------- 180

  Fly   444 VGVGGNGSPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNTNNSGRTNF 508
                                         ..|.:||..|                ......||.:
 Frog   181 -----------------------------VSSVNPNYTG----------------GEPKRSRTAY 200

  Fly   509 TNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQNRRMKQKK--RVKEGLIPADILT 571
            |.:|:.|||||||:||||||.||||||::|.|:|.|:||||||||||.||  |:....:.::..:
 Frog   201 TRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSNASS 265

  Fly   572 QHSTSVIS 579
            ..|:::|:
 Frog   266 NASSNIIA 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
labNP_476613.1 Homeobox 505..557 CDD:278475 37/51 (73%)
hoxc4XP_002936684.1 Homeobox 196..250 CDD:365835 37/53 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

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