DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Taf1 and Taf1

DIOPT Version :9

Sequence 1:NP_001246952.1 Gene:Taf1 / 40813 FlyBaseID:FBgn0010355 Length:2172 Species:Drosophila melanogaster
Sequence 2:NP_001178652.1 Gene:Taf1 / 317256 RGDID:1562050 Length:1893 Species:Rattus norvegicus


Alignment Length:2118 Identity:967/2118 - (45%)
Similarity:1283/2118 - (60%) Gaps:325/2118 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SDNSDDEGSIGNG-LDLTGILFGNIDSEGRLLQDDDGEGRGGTGFDAELRENIGSLSKLGLDSML 68
            ||...||.|.|.| ..|||.|||||:..|:|        .|.:..|.|.::::..|..|||.|::
  Rat    22 SDTDSDEDSAGGGPFSLTGFLFGNINGAGQL--------EGESVLDDECKKHLAGLGALGLGSLI 78

  Fly    69 LEVIDLKEAEPPSDDEEEEDARPSAVSASEGMSAFDALKAGVKREDGAVKAQDDAIDYSDITELS 133
            .|                       ::|:|.:|..|..   :..::|.:::::||:|||||.|::
  Rat    79 TE-----------------------LTANEELSGTDGT---LVNDEGWIRSREDAVDYSDINEVA 117

  Fly   134 EDCPRTPPEETSTYDDLEDAIPASKVEAKLREDIAQIFKGLCNSCQSDTITFAPLRLGSDLLLYR 198
            ||       |:..|.                    |....|...|.:|               |.
  Rat   118 ED-------ESRRYQ--------------------QTMGSLQPLCHTD---------------YD 140

  Fly   199 ENNSHFVAAKDDKELMPPPSAPMR--------------SGSGGGIEEP---------------AK 234
            |::........|.:|||||..|..              |..|.||..|               :.
  Rat   141 EDDYDADCEDIDCKLMPPPPPPPGPVKKERDQDGITGVSEDGEGIILPSIIAPSSLASEKVDFSS 205

  Fly   235 SNDASSPSDDSKSTDSKDADRKLDTPLADI--------LPSKYQNVDVRELFPDFRPQKVLRFSR 291
            |:|:.|.....::|.|:..|.||..|||.|        |||      |.||||:|||.|||||.|
  Rat   206 SSDSESEMGPQEATQSESKDGKLTLPLAGIMQHDATKLLPS------VTELFPEFRPGKVLRFLR 264

  Fly   292 LFGPGKPTSLPQIWRHVRKRRRKRNQSRDQKTTNTGGSDSPSDTEEPRKRGFSLHYAAEPTPAEC 356
            ||||||  ::|.:||..|::|:|:::...|: ......:...:.|..:|..::..||..|.|.:|
  Rat   265 LFGPGK--NVPSVWRSARRKRKKKHRELIQE-EQIQEEECSVELEVNQKSLWNYDYAPPPLPEQC 326

  Fly   357 MSDDEDKLLGDFNSEDVRPEGPDNGENSDQKPKVADWRFGPAQIWYDMLEVPDSGEGFNYGFKTK 421
            :||||..::....|:..:..| |..:..|.||:||:||:|||::|||||.||:.|.||:||||.|
  Rat   327 LSDDEITMMAPVESKFSQSTG-DTDKVMDTKPRVAEWRYGPARLWYDMLGVPEDGSGFDYGFKMK 390

  Fly   422 AASTSSQPQLKDERRVKSPEDDVEDPSIADDAFLMVSQLHWEDDVVWDGNDIKAKVLQKLNSKTN 486
            .....|..:....::::..|::.....:||:.||||:|||||||::|||.|:|.|..:.  .:.:
  Rat   391 KTEHDSTMKYNIMKKLRKLEENNGVDLLADENFLMVTQLHWEDDIIWDGEDVKHKGTKP--QRAS 453

  Fly   487 AAGWLPSSGSRTAGAFSQPGKPSMPVGSGSSKQGSGASSKKAQQNAQAKPAEAPDDTWYSLFPVE 551
            .|||||||.:|.|.|:             :.:||..|:..             .|..|||:||::
  Rat   454 LAGWLPSSMTRNAMAY-------------NVQQGFTATLD-------------DDKPWYSIFPID 492

  Fly   552 NEELIYYKWEDEVIWDAQQVSKVPKPKVLTLDPNDENIILGIPDDID------PSKINKSTGPPP 610
            ||:|:|.:|||.:|||||.:.::.:|.||||||||||:||.|||:.:      |||.||.     
  Rat   493 NEDLVYGRWEDNIIWDAQNMPRILEPPVLTLDPNDENLILEIPDEKEEATSNSPSKENKK----- 552

  Fly   611 KIKIPHPHVKKSKILLGKAGVINVLAEDTPPPPPKSPD-RDPFNISNDTYYTPKTEPTLRLKVGG 674
                 ...:|||:|||||.|||    ::.|......|: :||:|:|||.||.|| :..||...||
  Rat   553 -----ESSLKKSRILLGKTGVI----KEEPQQNMSQPEVKDPWNLSNDEYYYPK-QQGLRGTFGG 607

  Fly   675 NLIQHSTPVVELRAPFVPTHMGPMKLRAFHRPPLKKYSHGPMAQSIPHPVFPLLKTIAKKAKQRE 739
            |:||||.|.||||.||.||||||:|||.||||||||||.|.::|..||.|.||||.|.||||.||
  Rat   608 NIIQHSIPAVELRQPFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMRE 672

  Fly   740 VERIASGGGDVFFMRNPEDLSGRDGDIVLAEFCEEHPPLINQVGMCSKIKNYYKRKAEKDSGPQD 804
            .||.|||||::||||.|:||:|:|||::|||:.||:.||:.||||.:|||||||||..||.|..|
  Rat   673 QERQASGGGEMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPD 737

  Fly   805 FVYGEVAFAHTSPFLGILHPGQCIQAIENNMYRAPIYPHKMAHNDFLVIRTRNNYWIRSVNSIYT 869
            ..|||..:.|||||||.|||||.:||.|||::|||||.|||..:|||:||||..|:||.:..|:.
  Rat   738 CKYGETVYCHTSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPESDFLIIRTRQGYYIRELVDIFV 802

  Fly   870 VGQECPLYEVPGPNSKRANNFTRDFLQVFIYRLFWKSRDNPRRIRMDDIKQAFPAHSESSIRKRL 934
            |||:|||:|||||||||||...|||||||||||||||:|.||||||:|||:|||:||||||||||
  Rat   803 VGQQCPLFEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRL 867

  Fly   935 KQCADFKRTGMDSNWWVIKPEFRLPSEEEIRAMVSPEQCCAYFSMIAAEQRLKDAGYGEKFLFAP 999
            |.|||||||||||||||:|.:||||:||||||||||||||||:|||||||||||||||||..|||
  Rat   868 KLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAGYGEKSFFAP 932

  Fly  1000 QEDDDEEAQLKLDDEVKVAPWNTTRAYIQAMRGKCLLQLSGPADPTGCGEGFSYVRVPNKPTQTK 1064
            :|:::|:.|:|:||||:.||||||||:|.||:|||||:::|.|||||||||||||::||||||.|
  Rat   933 EEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGEGFSYVKIPNKPTQQK 997

  Fly  1065 EEQESQP-KRSVTGTDADLRRLPLQRAKELLRQFKVPEEEIKKLSRWEVIDVVRTLSTEKAKAGE 1128
            :::|.|| |::|||||||||||.|:.||:|||:|.||||||||||||||||||||:|||:|::||
  Rat   998 DDKEPQPVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRTMSTEQARSGE 1062

  Fly  1129 EGMDKFSRGNRFSIAEHQERYKEECQRIFDLQNRVLASSEVLSTDEAESSASEESDLEELGKNLE 1193
            ..|.||:||:|||:|||||||||||||||||||:||:|:|||||| .:||::|:||.||:|||:|
  Rat  1063 GPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTD-TDSSSAEDSDFEEMGKNIE 1126

  Fly  1194 NMLSNKKTSTQLSREREELERQELLRQLDEEHGGPSGSGGAKGAKG-KDDPGQQMLATNNQ--GR 1255
            |||.|||||:||||||||.||:||.|.|       ..:|.|.|... :||....:.:.|:.  ||
  Rat  1127 NMLQNKKTSSQLSREREEQERKELQRML-------LAAGSAAGGNNHRDDDTASVTSLNSSATGR 1184

  Fly  1256 ILRITRTFRGNDGKEYTRVETVRRQPVIDAYIKIRTTKDEQFIKQFATLDEQQKEEMKREKRRIQ 1320
            .|:|.||||..:||||.|.||||:..|||||::|||||||:||::||..|||.:|||::|:||||
  Rat  1185 CLKIYRTFRDEEGKEYVRCETVRKAAVIDAYVRIRTTKDEEFIRKFALFDEQHREEMRKERRRIQ 1249

  Fly  1321 EQLRRIKRNQERERLAQLAQNQKLQPGGMPTSLGDPKSSGGHSHKERDSGYKEVSPSRKKFKLKP 1385
            |||||:|||||:|:|                                 .|..|..|  ||.|.:|
  Rat  1250 EQLRRLKRNQEKEKL---------------------------------KGPPEKKP--KKMKERP 1279

  Fly  1386 DLKLKCGACGQVGHMRTNKACPLYSGMQSSLSQSNP-SLADDFDEQSEKEMT-MDDDDLVNVDGT 1448
            ||||||||||.:|||||||.||||  .|::...||| ::.::.:|:.||.:. .|:::|:.|:||
  Rat  1280 DLKLKCGACGAIGHMRTNKFCPLY--YQTNAPPSNPVAMTEEQEEELEKTVIHNDNEELIKVEGT 1342

  Fly  1449 KVTLSSKILKRHGGDDGKRRSGSSSGFTLKVPRDAM-GKKKRRVGGDLHCDYLQRHNKTANRRRT 1512
            |:.|..::::  ..|:.:|:|     ..||.|:..: .|||||||..:|||||.|.:|:.:||||
  Rat  1343 KIVLGKQLIE--SADEVRRKS-----LVLKFPKQQLPPKKKRRVGTTVHCDYLNRPHKSIHRRRT 1400

  Fly  1513 DPVVVLSSILEIIHNELRSMPDVSPFLFPVSAKKVPDYYRVVTKPMDLQTMREYIRQRRYTSREM 1577
            ||:|.||||||.|.|::|.:|:..||..||:||.|.|||:::|:||||||:||.:|:|.|.|||.
  Rat  1401 DPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREE 1465

  Fly  1578 FLEDLKQIVDNSLIYNGPQSAYTLAAQRMFSSCFELLAEREDKLMRLEKAINPLLDDDDQVALSF 1642
            |.|.|:.||.||..||||:.:.|..:|.|...|.|.|.|:||||.|||||||||||||||||.||
  Rat  1466 FREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSF 1530

  Fly  1643 IFDKLHSQ-IKQLPESWPFLKPVNKKQVKDYYTVIKRPMDLETIGKNIEAHRYHSRAEYLADIEL 1706
            |.|.:.:| :..:|:||||..|||||.|.|||.||..|||||||.|||..|:|.||..:|.|:.|
  Rat  1531 ILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 1595

  Fly  1707 IATNCEQYNGSDTRYTKFSKKILEYAQTQLIEFSEHCGQLENNIAKTQERARENAPEFDEAWGND 1771
            |..|..:|||.:::|||.:::|:......|.|:.||..|||.:|...:|.|.|.|    |....|
  Rat  1596 ILANSVKYNGPESQYTKTAQEIVNVCHQTLTEYDEHLTQLEKDICTAKEAALEEA----ELESLD 1656

  Fly  1772 DYNFDRGSRASSPGDDYIDVEGHGGHASSSNSIHRSMGAEAGSSHTAPAVRKPAPPGPGEVKRGR 1836
            .......:..:.|.|.|.:        |:|.|:.|........|:.: .:..|:.....::.:..
  Rat  1657 PMTPGPYTPQAKPPDLYDN--------STSLSVSRDASVYQDESNLS-VLDIPSATSEKQLTQEG 1712

  Fly  1837 GRPRKQRDPVEEVKSQNPVKRGRGRPRKDSLASNMSHTQAYFLDEDLQCSTDDEDDDEEEDFQEV 1901
            |.........||...|.|                    ||..|.|||..| :.|||:|:....|.
  Rat  1713 GDGDGDLADEEEGTVQQP--------------------QASVLYEDLLMS-EGEDDEEDAGSDEE 1756

  Fly  1902 SEDENNAASILDQGERINAPADAMDGMFDPK-------NIKTEIDLEAHQMAEEPIGEDDSQQVA 1959
            .::..:|..:.:.|    :.:|...|...||       |.:..::.|...|:.|..|.:.|:.:.
  Rat  1757 GDNPFSAIQLSESG----SDSDVESGSIRPKQPRMLQENTRMGMENEESMMSYEGDGGEASRGLE 1817

  Fly  1960 EAMV-----------------QLSGVGGY-YAQQQQDESMDVDPNYDPSDFLAMHKQRQSLGEPS 2006
            ::.:                 ..|.:||| .:::::||                .:||......|
  Rat  1818 DSNISYGSYEEPDPKSNTQDTSFSSIGGYEVSEEEEDE----------------EEQRSGPSVLS 1866

  Fly  2007 SLQGAFTNFLSHEQDDNGPYNPAEASTSAASGADLGMD 2044
            .:|      ||.:::|      :|...|.|..:||..|
  Rat  1867 QVQ------LSEDEED------SEDLHSIAGDSDLDSD 1892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Taf1NP_001246952.1 TBP-binding 15..76 CDD:286347 21/61 (34%)
DUF3591 652..1114 CDD:288969 333/462 (72%)
zf-CCHC_6 1388..>1418 CDD:291934 20/29 (69%)
Bromo_TFIID 1518..1629 CDD:99943 62/110 (56%)
Bromo_TFIID 1640..1751 CDD:99943 54/111 (49%)
Taf1NP_001178652.1 TBP-binding 33..86 CDD:286347 19/53 (36%)
DUF3591 586..1048 CDD:288969 307/468 (66%)
zf-CCHC_6 1282..1317 CDD:291934 23/34 (68%)
Bromo_TFIID 1406..1517 CDD:99943 48/113 (42%)
Bromo_TFIID 1528..1640 CDD:99943 62/111 (56%)
SEEEED <1742..1833 CDD:291463 22/90 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H37942
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D103411at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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