DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sowi and Cib4

DIOPT Version :10

Sequence 1:NP_649671.2 Gene:sowi / 40809 FlyBaseID:FBgn0037460 Length:217 Species:Drosophila melanogaster
Sequence 2:XP_001068424.2 Gene:Cib4 / 688819 RGDID:1584147 Length:185 Species:Rattus norvegicus


Alignment Length:183 Identity:34/183 - (18%)
Similarity:74/183 - (40%) Gaps:43/183 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IKELTLTSELSQTDITCLLVVYYKFSKANGPQCKQMTKKQFYQIFLVLFNVASVQVIERTLLAIT 88
            ::|....:.|::.:|.|:...:.|.....         |.:.:..|.:..|:|:..:.       
  Rat    14 LEEYQALTFLTRNEILCIHDTFLKLCPPG---------KHYKEATLTMDQVSSLPALR------- 62

  Fly    89 KDTKYVSP------RAWIHLFDLYTTNDI-------------QVRMRFAFEVYDTKGTGVIDREQ 134
                 |:|      |.:.| .|:::..|:             .:::.:||.:||....|.||.|.
  Rat    63 -----VNPFRDRICRVFSH-DDVFSFEDVLGMASVFSEQACPSLKIEYAFRIYDFNENGFIDEED 121

  Fly   135 VGTACEKFFYGEDEDELNELKADMTEFLMKKFDLDKDGVISYEDYSTVVEQQP 187
            :.....:....:|..|  :|..|:|..::.:.|||.|.::|:.::...:.:.|
  Rat   122 LQKIVLRLLKSDDVSE--DLLQDVTHHVLSESDLDNDNMLSFSEFEHAMAKSP 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sowiNP_649671.2 EF-hand_7 114..179 CDD:463900 18/64 (28%)
Cib4XP_001068424.2 EF-hand_7 101..168 CDD:463900 18/68 (26%)

Return to query results.
Submit another query.