DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sowi and chpf-2

DIOPT Version :9

Sequence 1:NP_649671.2 Gene:sowi / 40809 FlyBaseID:FBgn0037460 Length:217 Species:Drosophila melanogaster
Sequence 2:NP_503830.2 Gene:chpf-2 / 186617 WormBaseID:WBGene00019108 Length:195 Species:Caenorhabditis elegans


Alignment Length:183 Identity:45/183 - (24%)
Similarity:81/183 - (44%) Gaps:38/183 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SRFAAL----YGSLIKELTL-TSELSQTDITCLLV-VYYKFSKANG-PQCKQMTKKQFYQIFLVL 71
            :|||:|    .|.|.::..| ..||:...:...:: .::....::| .:..|:|.:||.:|    
 Worm    33 TRFASLDKNGQGYLSRDDFLNVPELAVNPLGDRIIDAFFTLGDSDGDSKSGQLTFRQFVRI---- 93

  Fly    72 FNVASVQVIERTLLAITKDTKYVSPRAWIHLFDLYTTNDIQVRMRFAFEVYDTKGTGVIDREQVG 136
              :|..|.|.:     .||.               ..|..:.::||||::||......|.||:..
 Worm    94 --LAHFQPISK-----VKDN---------------ALNSRKDKLRFAFKMYDLNKNNYITREEFK 136

  Fly   137 TACEKFFYGE-DEDELNELKADMTEFLMKKFDLDKDGVISYEDYSTVVEQQPI 188
            .......... ..|:|::: ||.|   :::.|.|:||.||:||:...:|:..|
 Worm   137 VILNSMVGANITSDQLDKI-ADKT---LEEADQDRDGKISFEDFCRAMEKTDI 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sowiNP_649671.2 EF-hand_7 115..179 CDD:290234 21/64 (33%)
EFh 116..178 CDD:238008 20/62 (32%)
chpf-2NP_503830.2 FRQ1 15..182 CDD:227455 43/178 (24%)
EFh 35..95 CDD:298682 14/65 (22%)
EFh 114..180 CDD:238008 22/69 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0034
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.