DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31482 and Crispld1

DIOPT Version :9

Sequence 1:NP_731097.1 Gene:CG31482 / 40806 FlyBaseID:FBgn0051482 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001128435.1 Gene:Crispld1 / 316482 RGDID:1564813 Length:500 Species:Rattus norvegicus


Alignment Length:180 Identity:47/180 - (26%)
Similarity:67/180 - (37%) Gaps:55/180 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LNEHNRLREK-----HGSPPLTLDDELTKGCEEYAKVLANNEKLEHS-----SSAGQNYGENLCM 81
            |:.||:||.:     .....:|.|.||.:..|.:|:...    .||.     .|.|||.|.: ..
  Rat    66 LDLHNKLRSQVYPAASNMEYMTWDVELERSAESWAETCL----WEHGPTSLLPSIGQNLGAH-WG 125

  Fly    82 RSQTPLQCVQDWYDEIADYDFEKPQ-------FAMS---TGHFTALVWKNAKKMGI--------- 127
            |.:.|...||.||||:.|:.:....       |..|   ..|:|.:||..:.::|.         
  Rat   126 RYRPPTFHVQAWYDEVRDFSYPYEHECDPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMN 190

  Fly   128 --GQAKDK----------KGYYWVVARY--------YPPVNVNGQFEENV 157
              ||...|          ||.:|..|.|        .|| :..|...||:
  Rat   191 IWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGKPCSACPP-SFGGGCRENL 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31482NP_731097.1 SCP_GAPR-1_like 21..149 CDD:240182 44/170 (26%)
Crispld1NP_001128435.1 SCP_euk 63..207 CDD:240180 37/145 (26%)
LCCL 291..375 CDD:128866
LCCL 394..492 CDD:281766
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X35
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.