back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment dpr11 and sdk

DIOPT Version :9

Sequence 1:	NP_001262320.1	Gene:	dpr11 / 40800	FlyBaseID:	FBgn0053202	Length:	360	Species:	Drosophila melanogaster
Sequence 2:	NP_001284756.1	Gene:	sdk / 31017	FlyBaseID:	FBgn0021764	Length:	2265	Species:	Drosophila melanogaster

Alignment Length:	320	Identity:	71/320 - (22%)
Similarity:	113/320 - (35%)	Gaps:	92/320 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly     9 RSEMQTLETRVRPLQGAQLTQLLLGGILCLTIASHTQTSAEAAGGRVSGPGAGTSEGAGTSSASA 73
            |.:.:|.:.||:.|...::.::                       |.|..|.|:.:|
  Fly   449 RVKTKTAKNRVKRLAQPRILRV-----------------------RASHAGLGSEKG-------- 482

  Fly    74 ASTAISSDESGDPSSATAFSSLAQVSSLLPEASALSATSGLVEPYLDGYATSNVTTQIGTHAYLP 138
                 |...|.|......|:| |.:..|.|:                     |||...|..|.:.
  Fly   483 -----SESGSSDRRKEFRFAS-APIMELPPQ---------------------NVTALDGKDATIS 520

  Fly   139 CRVKQLGNKSVSWIRLRDGHILTVDRAVFIADQRFLAIKQPDKYWTLQIKYVQARDAGSYECQVS 203
            ||.....|.:::|| ..:..::.:...|.|.:...|.|..           :::.|||.|.|..:
  Fly   521 CRAVGSPNPNITWI-YNETQLVDISSRVQILESGDLLISN-----------IRSVDAGLYICVRA 573

  Fly   204 TEP-KVSARVQLQVVVPRTEILGEP-DRYVKAGSNVVLRCIVRGALEPPTFIMWYHGAEQLA--A 264
            .|. .|.....|.|:| ||:|:..| |..|..|....|:|.|......|..|.||...:...  :
  Fly   574 NEAGSVKGEAYLSVLV-RTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPIS 637

  Fly   265 DSRRHRTQLDPNLPEASGEGQSTIGSLIIESAKKRDTGNYTC---SPSNSPSATVTLNII 321
            :|:|...|.|              |.|.|::.:..|.|:|.|   ||..:.:....|::|
  Fly   638 NSQRIGVQAD--------------GQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVI 683

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.