DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr11 and Lsamp

DIOPT Version :9

Sequence 1:NP_001262320.1 Gene:dpr11 / 40800 FlyBaseID:FBgn0053202 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:234 Identity:72/234 - (30%)
Similarity:96/234 - (41%) Gaps:36/234 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 TSNVTTQIGTHAYLPCRVKQLGNKSVSWIRLRDGHILTVDRAVFIADQRFLAIKQPDKYWTLQIK 188
            |.|:|.:.|..|.|.|.|:. .|..|:|:. |.| |:......:..|.|....|:....::|:|:
  Rat    55 TDNITVRQGDTAILRCVVED-KNSKVAWLN-RSG-IIFAGHDKWSLDPRVELEKRHALEYSLRIQ 116

  Fly   189 YVQARDAGSYECQVST--EPKVSARVQLQVVVPRTEILGEPDRYVKAGSNVVLRCIVRGALEPPT 251
            .|...|.|||.|.|.|  |||.| :|.|.|.||........|..|..||||.|.|:..|..||  
  Rat   117 KVDVYDEGSYTCSVQTQHEPKTS-QVYLIVQVPPKISNISSDVTVNEGSNVTLVCMANGRPEP-- 178

  Fly   252 FIMWYHGAEQLAADSRRHRTQLDPNLPEASGEGQSTIGSLIIESAKKRDTGNYTCSPSNSPSAT- 315
            .|.|.|               |.|...|..||.:    .|.|....:..:|.|.|..:|..|:. 
  Rat   179 VITWRH---------------LTPLGREFEGEEE----YLEILGITREQSGKYECKAANEVSSAD 224

  Fly   316 -----VTLN---IINGESSASAVTSSAATTRAYALSILA 346
                 ||:|   .|....|..|.|...|:.:..|.::.|
  Rat   225 VKQVKVTVNYPPTITESKSNEATTGRQASLKCEASAVPA 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr11NP_001262320.1 I-set 125..216 CDD:254352 32/92 (35%)
Ig 127..217 CDD:299845 31/91 (34%)
IG_like 227..320 CDD:214653 29/101 (29%)
IGc2 234..311 CDD:197706 22/76 (29%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 33/93 (35%)
FR1 55..71 CDD:409353 6/15 (40%)
Ig strand A' 56..62 CDD:409353 2/5 (40%)
Ig strand B 64..72 CDD:409353 3/7 (43%)
CDR1 72..76 CDD:409353 1/4 (25%)
FR2 77..84 CDD:409353 2/7 (29%)
Ig strand C 77..83 CDD:409353 2/5 (40%)
CDR2 85..95 CDD:409353 2/10 (20%)
Ig strand C' 87..90 CDD:409353 1/2 (50%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 11/34 (32%)
Ig strand D 100..107 CDD:409353 2/6 (33%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 4/7 (57%)
CDR3 132..136 CDD:409353 1/3 (33%)
Ig strand G 136..145 CDD:409353 5/9 (56%)
FR4 138..145 CDD:409353 3/7 (43%)
Ig_3 148..218 CDD:404760 25/90 (28%)
Ig strand A' 155..160 CDD:409353 1/4 (25%)
Ig strand B 166..173 CDD:409353 3/6 (50%)
Ig strand C 179..184 CDD:409353 2/4 (50%)
Ig strand D 190..193 CDD:409353 1/2 (50%)
Ig strand E 197..203 CDD:409353 2/9 (22%)
Ig strand F 210..217 CDD:409353 3/6 (50%)
Ig strand G 224..232 CDD:409353 1/7 (14%)
Ig_3 235..311 CDD:404760 7/29 (24%)
Ig strand B 252..256 CDD:409353 1/3 (33%)
Ig strand C 265..269 CDD:409353
Ig strand E 290..294 CDD:409353
Ig strand F 304..309 CDD:409353
Ig strand G 318..321 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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