DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr11 and lsamp

DIOPT Version :9

Sequence 1:NP_001262320.1 Gene:dpr11 / 40800 FlyBaseID:FBgn0053202 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_031751462.1 Gene:lsamp / 100124984 XenbaseID:XB-GENE-5759171 Length:368 Species:Xenopus tropicalis


Alignment Length:263 Identity:77/263 - (29%)
Similarity:107/263 - (40%) Gaps:38/263 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 LAQVSSLLPEASALSATSGLVEPYLD-GYATSNVTTQIGTHAYLPCRVKQLGNKSVSWIRLRDGH 158
            |.::..|||  :.|...||      | ..:|.|:|.:.|..|.|.|.|:...:: |:|:. |.|.
 Frog    16 LLRLLCLLP--TGLPVRSG------DFNRSTDNITVRQGDTAILRCFVEDRSSR-VAWLN-RSGI 70

  Fly   159 ILTVDRAVFIADQRFLAIKQPDKYWTLQIKYVQARDAGSYECQVSTEPKV-SARVQLQVVVPRTE 222
            |...|.. :..|.|....|:....::|:|:.|...|.|.|.|.|.|:... :.:|.|.|.||...
 Frog    71 IFAGDDK-WSLDPRVELEKRSLLEYSLRIQKVDVSDEGPYTCSVQTKQHTKTTQVYLIVQVPPKI 134

  Fly   223 ILGEPDRYVKAGSNVVLRCIVRGALEPPTFIMWYHGAEQLAADSRRHRTQLDPNLPEASGEGQST 287
            .....|..|..||||.|.||..|..||  .|.|            ||.|......|....||:..
 Frog   135 SNISADITVNEGSNVTLMCIAYGRPEP--MITW------------RHLTPTAGTSPARDFEGEEE 185

  Fly   288 IGSLIIESAKKRDTGNYTCSPSNSPSAT------VTLN---IINGESSASAVTSSAATTRAYALS 343
            .  |.|:...:..:|.|.|..:|..::.      ||:|   ||....|..|.|...|..|..|.:
 Frog   186 F--LEIQGITREQSGRYECKAANEVASADVKQVRVTVNYPPIITESKSNEATTGKQAILRCEASA 248

  Fly   344 ILA 346
            :.|
 Frog   249 VPA 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr11NP_001262320.1 I-set 125..216 CDD:254352 27/91 (30%)
Ig 127..217 CDD:299845 26/90 (29%)
IG_like 227..320 CDD:214653 29/101 (29%)
IGc2 234..311 CDD:197706 23/76 (30%)
lsampXP_031751462.1 Ig 38..128 CDD:416386 28/92 (30%)
FR1 38..54 CDD:409353 6/15 (40%)
Ig strand A' 39..45 CDD:409353 2/5 (40%)
Ig strand B 47..55 CDD:409353 3/7 (43%)
CDR1 55..59 CDD:409353 1/3 (33%)
FR2 60..67 CDD:409353 2/8 (25%)
Ig strand C 60..66 CDD:409353 2/6 (33%)
CDR2 68..78 CDD:409353 3/10 (30%)
Ig strand C' 70..73 CDD:409353 1/2 (50%)
Ig strand C' 75..78 CDD:409353 1/3 (33%)
FR3 79..114 CDD:409353 10/34 (29%)
Ig strand D 83..90 CDD:409353 2/6 (33%)
Ig strand E 93..99 CDD:409353 1/5 (20%)
Ig strand F 106..114 CDD:409353 3/7 (43%)
CDR3 115..119 CDD:409353 1/3 (33%)
Ig strand G 119..128 CDD:409353 2/8 (25%)
FR4 121..128 CDD:409353 2/6 (33%)
Ig_3 131..206 CDD:404760 26/90 (29%)
Ig strand A' 138..143 CDD:409353 1/4 (25%)
Ig strand B 149..156 CDD:409353 4/6 (67%)
Ig strand C 162..167 CDD:409353 2/16 (13%)
Ig strand C' 173..175 CDD:409353 0/1 (0%)
Ig strand E 185..191 CDD:409353 2/7 (29%)
Ig strand F 198..205 CDD:409353 3/6 (50%)
Ig strand G 212..220 CDD:409353 1/7 (14%)
Ig_3 223..302 CDD:404760 9/29 (31%)
putative Ig strand A 224..230 CDD:409353 2/5 (40%)
Ig strand B 240..244 CDD:409353 1/3 (33%)
Ig strand C 253..257 CDD:409353
Ig strand E 281..285 CDD:409353
Ig strand F 295..300 CDD:409353
Ig strand G 308..311 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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