DRSC/TRiP Functional Genomics Resources

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Protein Alignment Neurochondrin and Ncdn

DIOPT Version :9

Sequence 1:NP_649658.1 Gene:Neurochondrin / 40796 FlyBaseID:FBgn0037447 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_036116.3 Gene:Ncdn / 26562 MGIID:1347351 Length:729 Species:Mus musculus


Alignment Length:739 Identity:206/739 - (27%)
Similarity:347/739 - (46%) Gaps:103/739 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFEAIGFPFLKKLLVSKDLPNDCPPLVYKSVA 79
            |:..|:|:|:||||.:|||.||..|.:|..::.:|:|:||.|..:||.:|:.|:.||..|.:::.
Mouse    43 LREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALG 107

  Fly    80 LSILTCFCQEEELATHKDIIDAIPTLLEIVEQADDEDYEDNLIVVSEAYSCLKSIASHEPGQQAL 144
            :::|.|||.:.|||:|..:::.||.|...:....|.|......::.:.|.||.::|....|.:.|
Mouse   108 VALLACFCSDPELASHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHL 172

  Fly   145 LATGAIPKMSQIYSAQSFQTDEALHLIVLLVKQFGVVSWPEDPTAFHALIQRIALDMETDDTERK 209
            :|.|.:..:.|.|....:..|:||.|:|.|:.......|.|......|:::.::.|.:..:...|
Mouse   173 IAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQRAEDASK 237

  Fly   210 YELCRIL------ADILITCRREIVINSLEGQIWPESLFKGCGDILKAKIGPKQRDPALHLIATT 268
            :|||::|      ..:...|.|:              |..|...||.:|:...||:|||.|.|..
Mouse   238 FELCQLLPLFLPPTTVPPECHRD--------------LQAGLARILGSKLSSWQRNPALKLAARL 288

  Fly   269 LHVLGIQWAFMDEQKTFFLQLL-QLGAIEVRMQMDEKKLETTFKQAELLTCCFSILEHCI-EYMA 331
            .|..|..|..:....:.||.|| .|..:|||:.::|...|.   :.:::|.|::::|..| |...
Mouse   289 AHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEV---KEDVVTACYALMELGIQECTR 350

  Fly   332 TDQLDLEPKEKQTTYTALKGAFNQVLAVLTRVSQDKIRESSNPKDKKFVFAIVKVLSAWLAQETT 396
            .:|..|:..:|....:.:|.|...|:..|.:|..:|.:|       .||||.|::|.||||:||:
Mouse   351 CEQSLLKEPQKVQLVSIMKEAIGAVIHYLLQVGPEKQKE-------PFVFASVRILGAWLAEETS 408

  Fly   397 AMRPAIYKLLPFMLKVANESFQELK---------------------TWRAGTREGEPPIDVLRIM 440
            ::|..:.:||||:::.|...::|.:                     :|         |.|.||::
Mouse   409 SLRKEVCQLLPFLVRYAKTLYEEAEEASDISQQVANLAISPTTPGPSW---------PGDALRLL 464

  Fly   441 LPALCHFAVEEEARRVLFTHKQDEVLLESLEFYFSIAHWKRPPIPRAERLKRMNEP--DPVPTPE 503
            ||..||..||:..|.:|.......:|.:    || :..|:            :..|  |....|:
Mouse   465 LPGWCHLTVEDGPREILIKEGAPSLLCK----YF-LQQWE------------LTSPGHDTSVLPD 512

  Fly   504 QQAEMKVARSAIVALCNILMNFTVLEPKKAEDGPTFANLLKFVVENLPELKDTPDNLVIHGNLAV 568
            .      ....:...|:|.:|..|..|...:....|.:|:..::.:||.|......|::..|:|.
Mouse   513 S------VEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVAT 571

  Fly   569 LGLLLLKQQSKKVKQNDFSICR-YIQATIRFLWDAY--NIDESNDPTALVVSIAYKGYWSDLSEL 630
            ||||:.:..|...........| :..|.|.||..::  .....:|...|.:|..|:|.|:||.||
Mouse   572 LGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIWADLQEL 636

  Fly   631 WFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLSQLVDVNGDV 695
            ||||||...|.:||:|||:..||.|.|.:.:::.|..|...::...:.:||:..|.:|...|   
Mouse   637 WFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARAN--- 698

  Fly   696 QAVLKKADALRVCRNHRMMDLGKK 719
                      |:||....:..|::
Mouse   699 ----------RLCREAMRLQAGEE 712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NeurochondrinNP_649658.1 Neurochondrin 2..631 CDD:283244 178/649 (27%)
NcdnNP_036116.3 Neurochondrin 30..637 CDD:336138 178/649 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167835049
Domainoid 1 1.000 256 1.000 Domainoid score I2023
eggNOG 1 0.900 - - E1_KOG2611
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H8064
Inparanoid 1 1.050 300 1.000 Inparanoid score I2679
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG49523
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007454
OrthoInspector 1 1.000 - - oto91940
orthoMCL 1 0.900 - - OOG6_106255
Panther 1 1.100 - - LDO PTHR13109
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4680
SonicParanoid 1 1.000 - - X6328
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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