DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Zif and trem

DIOPT Version :9

Sequence 1:NP_001189188.1 Gene:Zif / 40795 FlyBaseID:FBgn0037446 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_650861.1 Gene:trem / 42392 FlyBaseID:FBgn0038767 Length:439 Species:Drosophila melanogaster


Alignment Length:441 Identity:121/441 - (27%)
Similarity:185/441 - (41%) Gaps:103/441 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CRVCL---AQSERLQRLDEIREEGEESPNEMLIQLLGVSYSNLNDREHIPDGICKSCKVELNMAY 71
            |||||   ::.|.|.. |...|......::||....|:..| |:|  :.||.:|..|...|.:.|
  Fly    12 CRVCLNNPSEGEELLH-DIFSETASTRLDQMLHICAGIPVS-LDD--NFPDKMCSKCVRCLRLCY 72

  Fly    72 QFREKALRKQMEIEEYCRELGLLD----------ESDVMMIKEE----------DGSQQQCDEEM 116
            :||....|....|      :.:||          |.|::.|.|:          :....|.|..|
  Fly    73 KFRLTCQRSHQHI------MDMLDREASNANAAGEGDLLSIAEDLSVESVLKSWEDYASQLDGGM 131

  Fly   117 YILEETTTGEEEHQ--------EEKGHEEYLEVDTSDQQECIGDTIEYLE-----DNYTIEMNSD 168
            .:     .|||:.|        |:...::....|..|..:.:.:.||..|     :.|.:..|.:
  Fly   132 KV-----EGEEDQQHQVITYVVEDGDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNEN 191

  Fly   169 QTEI------------------------VLESEKQYEETPSQQLALQEAAK------------AS 197
            ..||                        :|:|::.|:.|.::......:.:            .:
  Fly   192 SPEIAQEKGSTGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKNSPKVET 256

  Fly   198 LKARRGRVRRGLNSLTTSDGTEKGGYICDVCGNFYEKRGRMMEHRRRHDGICQYACELCDAKFQV 262
            .|.:.||..|  |.|:|        ||||||||.|..:.|:.||.:.|.|:..:.||:|...|..
  Fly   257 FKKKVGRKPR--NKLST--------YICDVCGNIYPTQARLTEHMKFHSGVKPHECEICGRGFVQ 311

  Fly   263 REQLRKHMYSHTGSKPYKCSFCSRQFFYESVLKSHENVHRGIKPYVCKVCDKAFAYAHSLTKHEL 327
            .:||.:||.:|||::||||::|...|...|....|..:|...:||||.||.:.|.|:.:|..|::
  Fly   312 NQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIHTKERPYVCDVCSRTFTYSDNLKFHKM 376

  Fly   328 IHSDIKLYRCDYCNKDFRLLHHMRQHEETKLHQNAVM----LAESMKVEMV 374
            ||:..|.:.||.|.|.|...:.:|.|.||  |...:.    ..||.|.|.|
  Fly   377 IHTGEKPHVCDLCGKGFVKAYKLRLHRET--HNRRITWRNDAEESTKAEDV 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZifNP_001189188.1 zf-AD 9..87 CDD:285071 25/79 (32%)
C2H2 Zn finger 225..245 CDD:275368 10/19 (53%)
COG5048 <250..369 CDD:227381 44/122 (36%)
C2H2 Zn finger 253..273 CDD:275368 8/19 (42%)
zf-H2C2_2 266..288 CDD:290200 11/21 (52%)
C2H2 Zn finger 281..301 CDD:275368 5/19 (26%)
zf-H2C2_2 294..318 CDD:290200 9/23 (39%)
C2H2 Zn finger 309..329 CDD:275368 7/19 (37%)
C2H2 Zn finger 337..353 CDD:275368 6/15 (40%)
tremNP_650861.1 zf-AD 11..87 CDD:214871 25/84 (30%)
COG5048 <264..411 CDD:227381 61/158 (39%)
C2H2 Zn finger 274..294 CDD:275368 10/19 (53%)
zf-H2C2_2 287..311 CDD:290200 8/23 (35%)
C2H2 Zn finger 302..322 CDD:275368 8/19 (42%)
zf-H2C2_2 315..338 CDD:290200 11/22 (50%)
C2H2 Zn finger 330..350 CDD:275368 5/19 (26%)
zf-H2C2_2 345..367 CDD:290200 9/21 (43%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
zf-H2C2_2 370..394 CDD:290200 9/23 (39%)
C2H2 Zn finger 386..406 CDD:275368 9/21 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3C1GA
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.860

Return to query results.
Submit another query.