DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Zif and CG4854

DIOPT Version :9

Sequence 1:NP_001189188.1 Gene:Zif / 40795 FlyBaseID:FBgn0037446 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_650860.1 Gene:CG4854 / 42391 FlyBaseID:FBgn0038766 Length:319 Species:Drosophila melanogaster


Alignment Length:352 Identity:86/352 - (24%)
Similarity:151/352 - (42%) Gaps:57/352 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CRVCLAQSERLQRLDEIREEGEESPNEMLIQLLGVSYSNLNDREHIPDGICKSCKVELNMAYQFR 74
            ||:||.|.:     ||.....|....:.:.:..||..|...|   .|:.||.||.:.|..|.:.|
  Fly    12 CRICLVQPK-----DESLMPTEPDFPDKIKRCTGVELSESPD---WPNRICTSCALLLRAALKLR 68

  Fly    75 EKALRKQMEIEEYCRELGLLDESDVMMIKEEDGSQQQCDEEMYILEETTTGEEEHQEEKGHEEYL 139
            ....:.:.:::|.     .|.|.::.::.:|..::::.:.......|.|..:.|.:     .|||
  Fly    69 SLCQQTEKDLKEQ-----KLQEINIEIVHDEQETKKKTESRDLSKNEATGSDSELE-----YEYL 123

  Fly   140 E-----VDTSDQQECIGDTIEYLEDNYTIEMNSDQTEIVLESEKQYEETPSQQLALQEAAKASLK 199
            :     :::|:...|..|           |:.|.:..|....|..|..:|...            
  Fly   124 DSYDVTLESSEDVACSAD-----------ELVSIEPAISAPEESVYSLSPKPV------------ 165

  Fly   200 ARRGRVRRGLNSLTTSDGTEKGGYICDVCGNFYEKRGRMMEHRRRHDGICQYACELCDAKFQVRE 264
                       :....|..:...:.|::|.|.|.:|.::..|.:.|.....:.||:|..:|:...
  Fly   166 -----------TFEDEDSGQAASFTCNICNNVYSERVKLTNHMKVHSAKKPHECEICHKRFRQTP 219

  Fly   265 QLRKHMYSHTGSKPYKCSFCSRQFFYESVLKSHENVHRGIKPYVCKVCDKAFAYAHSLTKHELIH 329
            ||.:||.:|||::||||.:|..:|...|....|:.:|...:||.|:.|.::|.|::.|..|...|
  Fly   220 QLARHMNTHTGNRPYKCDYCDSRFADPSTRIKHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTH 284

  Fly   330 SDIKLYRCDYCNKDFRLLHHMRQHEET 356
            :..:.:.|.||.|.|..|||...||::
  Fly   285 TGERPFSCQYCQKSFSQLHHKNSHEKS 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZifNP_001189188.1 zf-AD 9..87 CDD:285071 20/76 (26%)
C2H2 Zn finger 225..245 CDD:275368 6/19 (32%)
COG5048 <250..369 CDD:227381 39/107 (36%)
C2H2 Zn finger 253..273 CDD:275368 8/19 (42%)
zf-H2C2_2 266..288 CDD:290200 11/21 (52%)
C2H2 Zn finger 281..301 CDD:275368 5/19 (26%)
zf-H2C2_2 294..318 CDD:290200 7/23 (30%)
C2H2 Zn finger 309..329 CDD:275368 6/19 (32%)
C2H2 Zn finger 337..353 CDD:275368 8/15 (53%)
CG4854NP_650860.1 zf-AD 12..>57 CDD:285071 15/52 (29%)
C2H2 Zn finger 180..200 CDD:275368 6/19 (32%)
zf-H2C2_2 193..217 CDD:290200 6/23 (26%)
COG5048 201..>258 CDD:227381 20/56 (36%)
C2H2 Zn finger 208..228 CDD:275368 8/19 (42%)
zf-H2C2_2 221..244 CDD:290200 11/22 (50%)
C2H2 Zn finger 236..256 CDD:275368 5/19 (26%)
zf-H2C2_2 251..273 CDD:290200 7/21 (33%)
C2H2 Zn finger 264..284 CDD:275368 6/19 (32%)
zf-H2C2_2 277..301 CDD:290200 8/23 (35%)
C2H2 Zn finger 292..312 CDD:275368 10/20 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3C1GA
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.860

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