DRSC/TRiP Functional Genomics Resources

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Protein Alignment Zif and ZNF560

DIOPT Version :9

Sequence 1:NP_001189188.1 Gene:Zif / 40795 FlyBaseID:FBgn0037446 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_689689.2 Gene:ZNF560 / 147741 HGNCID:26484 Length:790 Species:Homo sapiens


Alignment Length:366 Identity:92/366 - (25%)
Similarity:134/366 - (36%) Gaps:71/366 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 SNLNDREHIPDGI----CKSCKVELNMAYQFREKALRKQMEIEEYCRELGLLDESDVMMIKEEDG 107
            ::||:......||    ||.|.....:...|.|.......|....|:|.|....:...:|:....
Human   361 THLNNHMQTHIGIKPYKCKHCGKTFTVPSGFLEHVRTHTGEKPYGCKECGKAFGTSAGLIEHIRC 425

  Fly   108 SQQQ----CDE--EMYILEETTTGE-EEHQEEK--GHEEYLEVDTSDQQECIGDTIEYLEDNYT- 162
            ..::    ||.  :.:|...:..|. ..|..||  .|:||        .:..|.:...:||..: 
Human   426 HAREKTFKCDHCGKAFISYPSLFGHLRVHNGEKPYEHKEY--------GKAFGTSSGVIEDRRSN 482

  Fly   163 ---IEMNSDQTEIVLES-------------EKQYE--------------------ETPSQQLALQ 191
               ...:.||...|..|             ||.::                    .|..:....:
Human   483 TGQKRFDCDQCGKVFVSFSSLFAHLRTHTGEKPFKCYKCGKPFTSSACLRIHMRTHTEERLYQCK 547

  Fly   192 EAAKASLKARRGRVRRGLNSLTTSDGTEKG--GYICDVCGNFYEKRGRMMEHRRRHDGICQYACE 254
            :..||..|.         :.||....|..|  .|.|..||..:.:|..:.:|.|||.|...|.|:
Human   548 KCGKAFTKC---------SYLTKHLRTHAGEKPYECMKCGKAFTERSYLTKHLRRHSGEKPYECK 603

  Fly   255 LCDAKFQVREQLRKHMYSHTGSKPYKCSFCSRQFFYESVLKSHENVHRGIKPYVCKVCDKAFAYA 319
            .|...|..|..|.||:..|||.|||:...|.:.|...|.|..|...|.|.|||.|..|:||::.:
Human   604 KCGKAFTERSDLTKHLRRHTGDKPYEYKDCGKAFVVSSSLVDHLRTHTGYKPYKCNACEKAYSRS 668

  Fly   320 HSLTKHELIHSDIKLYRCDYCNKDFR--LLHHMRQHEETKL 358
            ..||:|...|:..|...|:.|...||  :..|.|....||:
Human   669 CVLTQHLKTHAAEKTSECNACGNSFRNSMCFHDRLKTLTKI 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZifNP_001189188.1 zf-AD 9..87 CDD:285071 10/43 (23%)
C2H2 Zn finger 225..245 CDD:275368 6/19 (32%)
COG5048 <250..369 CDD:227381 41/111 (37%)
C2H2 Zn finger 253..273 CDD:275368 7/19 (37%)
zf-H2C2_2 266..288 CDD:290200 10/21 (48%)
C2H2 Zn finger 281..301 CDD:275368 5/19 (26%)
zf-H2C2_2 294..318 CDD:290200 11/23 (48%)
C2H2 Zn finger 309..329 CDD:275368 7/19 (37%)
C2H2 Zn finger 337..353 CDD:275368 6/17 (35%)
ZNF560NP_689689.2 KRAB 13..69 CDD:214630
KRAB 13..50 CDD:279668
KRAB 110..161 CDD:214630
KRAB 110..149 CDD:279668
C2H2 Zn finger 294..314 CDD:275368
C2H2 Zn finger 323..342 CDD:275368
COG5048 344..754 CDD:227381 92/366 (25%)
C2H2 Zn finger 350..370 CDD:275368 2/8 (25%)
zf-H2C2_2 362..386 CDD:290200 7/23 (30%)
C2H2 Zn finger 378..398 CDD:275368 5/19 (26%)
C2H2 Zn finger 406..426 CDD:275368 4/19 (21%)
C2H2 Zn finger 434..454 CDD:275368 4/19 (21%)
C2H2 Zn finger 490..510 CDD:275368 4/19 (21%)
zf-H2C2_2 502..527 CDD:290200 2/24 (8%)
C2H2 Zn finger 518..538 CDD:275368 0/19 (0%)
zf-H2C2_2 531..554 CDD:290200 3/22 (14%)
C2H2 Zn finger 546..566 CDD:275368 5/28 (18%)
zf-H2C2_2 558..582 CDD:290200 8/23 (35%)
C2H2 Zn finger 574..594 CDD:275368 6/19 (32%)
zf-H2C2_2 586..610 CDD:290200 8/23 (35%)
zf-C2H2 600..622 CDD:278523 8/21 (38%)
C2H2 Zn finger 602..622 CDD:275368 7/19 (37%)
C2H2 Zn finger 630..650 CDD:275368 5/19 (26%)
C2H2 Zn finger 658..678 CDD:275368 7/19 (37%)
C2H2 Zn finger 714..734 CDD:275368
zf-H2C2_2 726..751 CDD:290200
C2H2 Zn finger 742..762 CDD:275368
zf-H2C2_2 757..779 CDD:290200
C2H2 Zn finger 770..790 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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