DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9727 and rfx3

DIOPT Version :9

Sequence 1:NP_001262317.1 Gene:CG9727 / 40794 FlyBaseID:FBgn0037445 Length:1329 Species:Drosophila melanogaster
Sequence 2:NP_001073517.1 Gene:rfx3 / 570989 ZFINID:ZDB-GENE-061103-253 Length:765 Species:Danio rerio


Alignment Length:988 Identity:175/988 - (17%)
Similarity:290/988 - (29%) Gaps:433/988 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 QLGAQWTKSAAPAATTAP---------VSNSIPIPQPIPVALP-----------LQKPNANPYGN 51
            :.||..|.|..|..|:.|         |::.:|:.|.......           :|:.|.:.|.|
Zfish     5 EAGADSTVSTVPLQTSVPVQPAVSGQQVASQVPVQQQAQTVQQVQHVYQAQVQYVQEENNSVYTN 69

  Fly    52 CSLQPADIVYSATRFQGPAIHAKGSPLTITPVGPVGGAPASAQISPTSHTHVPVPVATPSGFVPP 116
            .:::    .||   :..|.::.:.|  :.......||..::||:|....||              
Zfish    70 GTIR----AYS---YSEPQLYNQNS--SGNYFDTQGGGGSAAQVSTVVSTH-------------- 111

  Fly   117 PFSNATSASGGVSTSVLTPNPFATASANAAGLAFANAFSFSTAQQLGLGKIMHAMGGATAGVPSA 181
                 :.|:.|..|..|           |.||......|.|.|..:|        |.:..|  ||
Zfish   112 -----SMANNGNGTGAL-----------AMGLTGGQIISSSGAYLIG--------GNSMDG--SA 150

  Fly   182 PVPVTTTPATAAPSTPTIAGPRHPNEGVPAASGVINSTIAENVMNALSNSNSAGSVPSEEKMRRV 246
            |.....| ..|:|:|..:|                                              
Zfish   151 PHGAAQT-TRASPATIEMA---------------------------------------------- 168

  Fly   247 LQVIETSLDDNAKLQISQILERVSGLKPIEKLFLYLRLPGECADTDPLRQPQNPLGTRSE-INHT 310
               |||             |::..||.                            ..||. :|..
Zfish   169 ---IET-------------LQKSEGLS----------------------------SQRSSLLNSH 189

  Fly   311 INWVRSHLEHDAQVSIPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSR 375
            :.|:..:.|....||:|:..:||.|:.:|:...:.|::.|.|||:::.:|.|:|.|||||||||:
Zfish   190 LQWLLDNYETAEGVSLPRSTLYNHYLRHCQEQKLDPVNAASFGKLIRSIFMGLRTRRLGTRGNSK 254

  Fly   376 YCYAAMR----------------KTTKLTPPQLPQLCKTEQI---VAGDSNSDPSQLT-SASSLG 420
            |.|..:|                ...:..|.|..|..|..|.   |:||:.|...|.| ||:...
Zfish   255 YHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKMDGVSGDNFSSAGQHTPSAAEQT 319

  Fly   421 GLPSTGGDSECWDVVRSWAE------------------KLLNT----KLESVADLSSRIKSN--- 460
            .:..:....:..|..|:..|                  |.|.|    ..|::.|:...::.|   
Zfish   320 FIAQSQHHQQFLDGSRALPEFVELDLGEAVDGVGPEDVKALQTLYREHCEAILDVVVNLQFNLIE 384

  Fly   461 NATVSTKKYTPREPKEKRVLADIGPLKKRRKKKRKGSTSSESSCNQLVTGQDAGSSQEASDEQIL 525
            |...:..:|:.....|                   |.|.:|:|....:.|:...:      ..||
Zfish   385 NLWQTFWRYSASSSVE-------------------GVTITENSGLSEIEGRLPRA------RLIL 424

  Fly   526 KIKQEIIDSPIHPQQPPIGYLQQVTPMNLATDQRSSSAVRNLTPKILEMGSPAVVLTQQEVSPTG 590
            ..:.|    .:|..            ||........:.|..|.|.:|.              |..
Zfish   425 LCRHE----AVHKW------------MNTCDHLMYQALVEILIPDVLR--------------PIP 459

  Fly   591 IVIKDEVEDYTSNIFCKKVLKAQQTKGFWANSPSSGTTSGVGLLVPPTITTTSATPPPPNSE--- 652
            ..:...:.::           |:..:|:..|:.||         :||.:..|..:.....::   
Zfish   460 SALTQAIRNF-----------AKSLEGWLTNAMSS---------IPPRMINTKVSAVSAFAQTLR 504

  Fly   653 ------------------TSPVPGPGLSMGPPSQMMS---------------------------- 671
                              ||.:          :||:|                            
Zfish   505 RYTSLNHLAQAARAVLQNTSQI----------NQMLSDLNRVDFANVQEQASWVCQCEEGVVQRL 559

  Fly   672 -------------------------TSSVSPSSTVDTTPKVA-------SRNQMMILRAKRLMAA 704
                                     |..:.|.....|.||.|       |....|::|...|.:|
Zfish   560 EQDFKATLQQQSSLEQWAAWLDNVVTQILKPYEDKPTLPKAARQFLLKWSFYSSMVIRDLTLRSA 624

  Fly   705 ----------------------ENAALAAAEDSGLPENLGLPRE----RVISICNMDKHELDDYF 743
                                  ...|.|..|.:     :|:..|    ..:|..|:||.|:.:..
Zfish   625 ASFGSFHLIRLLYDEYMFYLVEHRVAQATGETA-----IGVMGEFQDLNTMSPANIDKDEVSEMD 684

  Fly   744 LPGEDE-ENSEEP-------DNELLQYFQMGDAEE-----------KQLNSLDAAEQNKNPQEPP 789
            ...::| |.::||       :.:::|..|:|..|:           ..:|||           ||
Zfish   685 SDLDEEMEEADEPLAKREKVEADVIQVLQVGAMEDGSSAVVGIVQPSMINSL-----------PP 738

  Fly   790 TMGSAPEAMPAPG 802
            |..:..|.:.:.|
Zfish   739 TTNNHSEHILSTG 751

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9727NP_001262317.1 RFX_DNA_binding 307..383 CDD:280427 30/91 (33%)
rfx3NP_001073517.1 RFX1_trans_act <2..141 CDD:282451 35/174 (20%)
RFX_DNA_binding 190..262 CDD:280427 28/71 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3712
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D346630at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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