Protein Alignment CG9727 and rfx3

DIOPT Version :10

• Sequence 1: NP_001262317.1
• Gene: CG9727 / 40794
• FlyBaseID: FBgn0037445
• Length: 1329
• Species: Drosophila melanogaster
• Sequence 2: XP_073770240.1
• Gene: rfx3 / 570989
• ZFINID: ZDB-GENE-061103-253
• Length: 787
• Species: Danio rerio
• Alignment Length: 988
• Identity: 174/988 - (17%)
• Similarity: 290/988 - (29%)
• Gaps: 433/988 - (43%)

  Fly     7 QLGAQWTKSAAPAATTAP---------VSNSIPIPQPIPVALP-----------LQKPNANPYGN 51
            :.||..|.|..|..|:.|         |::.:|:.|.......           :|:.|.:.|.|
Zfish    27 EAGADSTVSTVPLQTSVPVQPAVSGQQVASQVPVQQQAQTVQQVQHVYQAQVQYVQEENNSVYTN 91

  Fly    52 CSLQPADIVYSATRFQGPAIHAKGSPLTITPVGPVGGAPASAQISPTSHTHVPVPVATPSGFVPP 116
            .:::    .||   :..|.::.:.|  :.......||..::||:|....||
Zfish    92 GTIR----AYS---YSEPQLYNQNS--SGNYFDTQGGGGSAAQVSTVVSTH-------------- 133

  Fly   117 PFSNATSASGGVSTSVLTPNPFATASANAAGLAFANAFSFSTAQQLGLGKIMHAMGGATAGVPSA 181
                 :.|:.|..|..|           |.||......|.|.|..:|        |.:..|  ||
Zfish   134 -----SMANNGNGTGAL-----------AMGLTGGQIISSSGAYLIG--------GNSMDG--SA 172

  Fly   182 PVPVTTTPATAAPSTPTIAGPRHPNEGVPAASGVINSTIAENVMNALSNSNSAGSVPSEEKMRRV 246
            |.....| ..|:|:|..:|
Zfish   173 PHGAAQT-TRASPATIEMA---------------------------------------------- 190

  Fly   247 LQVIETSLDDNAKLQISQILERVSGLKPIEKLFLYLRLPGECADTDPLRQPQNPLGTRSE-INHT 310
               |||             |::..||.                            ..||. :|..
Zfish   191 ---IET-------------LQKSEGLS----------------------------SQRSSLLNSH 211

  Fly   311 INWVRSHLEHDAQVSIPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSR 375
            :.|:..:.|....||:|:..:||.|:.:|:...:.|::.|.|||:::.:|.|:|.|||||||||:
Zfish   212 LQWLLDNYETAEGVSLPRSTLYNHYLRHCQEQKLDPVNAASFGKLIRSIFMGLRTRRLGTRGNSK 276

  Fly   376 YCYAAMR----------------KTTKLTPPQLPQLCKTEQI---VAGDSNSDPSQLT-SASSLG 420
            |.|..:|                ...:..|.|..|..|..|.   |:||:.|...|.| :|:...
Zfish   277 YHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKMDGVSGDNFSSAGQHTPNAAEQT 341

  Fly   421 GLPSTGGDSECWDVVRSWAE------------------KLLNT----KLESVADLSSRIKSN--- 460
            .:..:....:..|..|:..|                  |.|.|    ..|::.|:...::.|
Zfish   342 FIAQSQHHQQFLDGSRALPEFVELDLGEAVDGVGPEDVKALQTLYREHCEAILDVVVNLQFNLIE 406

  Fly   461 NATVSTKKYTPREPKEKRVLADIGPLKKRRKKKRKGSTSSESSCNQLVTGQDAGSSQEASDEQIL 525
            |...:..:|:.....|                   |.|.:|:|....:.|:...:      ..||
Zfish   407 NLWQTFWRYSASSSVE-------------------GVTITENSGLSEIEGRLPRA------RLIL 446

  Fly   526 KIKQEIIDSPIHPQQPPIGYLQQVTPMNLATDQRSSSAVRNLTPKILEMGSPAVVLTQQEVSPTG 590
            ..:.|    .:|..            ||........:.|..|.|.:|.              |..
Zfish   447 LCRHE----AVHKW------------MNTCDHLMYQALVEILIPDVLR--------------PIP 481

  Fly   591 IVIKDEVEDYTSNIFCKKVLKAQQTKGFWANSPSSGTTSGVGLLVPPTITTTSATPPPPNSE--- 652
            ..:...:.::           |:..:|:..|:.||         :||.:..|..:.....::
Zfish   482 SALTQAIRNF-----------AKSLEGWLTNAMSS---------IPPRMINTKVSAVSAFAQTLR 526

  Fly   653 ------------------TSPVPGPGLSMGPPSQMMS---------------------------- 671
                              ||.:          :||:|
Zfish   527 RYTSLNHLAQAARAVLQNTSQI----------NQMLSDLNRVDFANVQEQASWVCQCEEGVVQRL 581

  Fly   672 -------------------------TSSVSPSSTVDTTPKVA-------SRNQMMILRAKRLMAA 704
                                     |..:.|.....|.||.|       |....|::|...|.:|
Zfish   582 EQDFKATLQQQSSLEQWAAWLDNVVTQILKPYEDKPTLPKAARQFLLKWSFYSSMVIRDLTLRSA 646

  Fly   705 ----------------------ENAALAAAEDSGLPENLGLPRE----RVISICNMDKHELDDYF 743
                                  ...|.|..|.:     :|:..|    ..:|..|:||.|:.:..
Zfish   647 ASFGSFHLIRLLYDEYMFYLVEHRVAQATGETA-----IGVMGEFQDLNTMSPANIDKDEVSEMD 706

  Fly   744 LPGEDE-ENSEEP-------DNELLQYFQMGDAEE-----------KQLNSLDAAEQNKNPQEPP 789
            ...::| |.::||       :.:::|..|:|..|:           ..:|||           ||
Zfish   707 SDLDEEMEEADEPLAKREKVEADVIQVLQVGAMEDGSSAVVGIVQPSMINSL-----------PP 760

  Fly   790 TMGSAPEAMPAPG 802
            |..:..|.:.:.|
Zfish   761 TTNNHSEHILSTG 773

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9727	NP_001262317.1	PHA03247	<40..207	CDD:223021	36/177 (20%)
		RFX_DNA_binding	307..385	CDD:460512	30/93 (32%)
rfx3	XP_073770240.1	None