Protein Alignment CG9727 and Rfx4

DIOPT Version :9

• Sequence 1: NP_001262317.1
• Gene: CG9727 / 40794
• FlyBaseID: FBgn0037445
• Length: 1329
• Species: Drosophila melanogaster
• Sequence 2: XP_038936002.1
• Gene: Rfx4 / 500818
• RGDID: 1562092
• Length: 757
• Species: Rattus norvegicus
• Alignment Length: 681
• Identity: 131/681 - (19%)
• Similarity: 222/681 - (32%)
• Gaps: 226/681 - (33%)

  Fly   310 TINWVRSHLEHDAQVSIPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNS 374
            |:.|:..:.|....|.||:..:|..|:.:||:...:|::.|.|||:::|.||.:..|||||||.|
  Rat    83 TLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQS 147

  Fly   375 RYCY--------------------------AAMRKTTKLT------------------------P 389
            :|.|                          ...|:.||.|                        |
  Rat   148 KYHYYGIAVKESSQYYDVMYSKKGAAWVSETGKREVTKQTVAYSPRSKLGTLLPDFPNVKDLNLP 212

  Fly   390 PQLPQ------------LCKTEQIVAGDSNSDPSQLTSASSLGGLP----STGGDSECWDVV--- 435
            ..||:            .|:........:|.|..|........|:|    ...|.|...::|
  Rat   213 ASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVC 277

  Fly   436 -----RSWAEKLLNTKLESVADLSSRIKSNNATVSTKKYTPREPKEKRV-LADIG--------PL 486
                 ::.:..|:.|.|:::.|        :.|...:|:..:..:..:| |.|:.        .|
  Rat   278 DSILYKAISGVLMPTVLQALPD--------SLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFEL 334

  Fly   487 KKRRKKKRKGSTSSESSCN------------------------QLVTGQDAGSSQEASDEQ---I 524
            .:|..:..:..||....|.                        ..:|.|...:.:::.||.   |
  Rat   335 SRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLSSITKQTLYTMEDSRDEHRRLI 399

  Fly   525 LKIKQEIIDSPIHPQQPPIGYLQQVTPM------NLATDQRSSSAVRNLTPKILEMGS---PAVV 580
            :::.|| .|..:..|.|...|::.:..|      .:|..::.|  ::.:..:.|.|.|   ..|:
  Rat   400 IQLYQE-FDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGS--LKKVAQQFLLMWSCFGTRVI 461

  Fly   581 --LTQQEVSPTG------IVIKDEVEDYTSNIFCK----KVLKAQQTKGFWANSPSSGTTSGVGL 633
              :|.......|      ::..|.|.....::.|:    ::::|.:.:|..|.:...
  Rat   462 RDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERANELMRAMKGEGSTAEAQEE-------- 518

  Fly   634 LVPPTITTTSATPPPPNSETSPVPGPGLSMGPPSQMMSTSSVSPSSTVDTTPK-----VASRNQM 693
                 |..|.||||.|:      |||..|   |::..::..|.|.|:..:.|.     :::...|
  Rat   519 -----IILTEATPPTPS------PGPSFS---PAKSATSVEVPPPSSPVSNPSPEYTGLSTTGAM 569

  Fly   694 MILRAKRLMAAENAALAAAEDS-GLP--ENLGLPRERVISICNMDKHELDDYFLPGEDEENSEEP 755
            .............||.:.||:| .||  .:..:|...|       .|.:..|      ....|..
  Rat   570 QSYTWSLTYTVTTAAGSPAENSQQLPCMRSTHVPSSSV-------THRIPVY------SHREEHG 621

  Fly   756 DNELLQYFQMGDAEEKQLNSLDAAEQNKNP--------------------------------QEP 788
            ......|...|:.....|       ||:.|                                .||
  Rat   622 YTGSYNYGSYGNQHPHPL-------QNQYPALPHDTAISGPLHYSPYHRSSAQYPFNSPTSRMEP 679

  Fly   789 PTMGSAPEAMPAP--GRGAAVVAAAAAMLAP 817
            ..|.|.|...|.|  .|...|..|.|...:|
  Rat   680 CLMSSTPRLHPTPVTPRWPEVPTANACYTSP 710

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9727	NP_001262317.1	RFX_DNA_binding	307..383	CDD:280427	28/98 (29%)
Rfx4	XP_038936002.1	RFX_DNA_binding	81..156	CDD:396712	28/72 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D346630at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010