Protein Alignment CG9727 and Rfx3

DIOPT Version :9

• Sequence 1: NP_001262317.1
• Gene: CG9727 / 40794
• FlyBaseID: FBgn0037445
• Length: 1329
• Species: Drosophila melanogaster
• Sequence 2: XP_038940262.1
• Gene: Rfx3 / 361746
• RGDID: 1307779
• Length: 780
• Species: Rattus norvegicus
• Alignment Length: 851
• Identity: 147/851 - (17%)
• Similarity: 247/851 - (29%)
• Gaps: 391/851 - (45%)

  Fly    13 TKSAAPAATTAPVSNSIPIPQPIPVALPLQKPNANPYGNCSLQPADIVY---SATRFQGPAIHAK 74
            |..|:.||....|...:|:.|.:.....:|:..       .:.||.:.|   |.|.:...||...
  Rat    49 TSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQ-------HVYPAQVQYVEGSDTVYTNGAIRTT 106

  Fly    75 GSPLTITPV--GPVGG-----APASAQISPTSHTHVPVPVATPSGFVPPPFSNATSASGGVSTSV 132
            ..|.|.|.:  ...||     ..:|||::....:|..|                  .:||:
  Rat   107 TYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMV------------------GTGGI---- 149

  Fly   133 LTPNPFATASANAAGLAFANAFSFSTAQQLGL--GKIMHAMGGATAGVPSAPVPVTTTPATAAPS 195
                                        |:|:  |:::.:.||...
  Rat   150 ----------------------------QMGVTGGQLISSSGGTYL------------------- 167

  Fly   196 TPTIAGPRHPNEGVPAASGVINSTIAENVMNALSNSNSAGSVPSEEKMRRVLQVIETSLDDNAKL 260
                                        :.|::.||..:.:..:......:...|||
  Rat   168 ----------------------------IGNSMENSGHSVTHTTRASPATIEMAIET-------- 196

  Fly   261 QISQILERVSGLKPIEKLFLYLRLPGECADTDPLRQPQNPLGTRSEINHTINWVRSHLEHDAQVS 325
                 |::..||.....                           |.:|..:.|:..:.|....||
  Rat   197 -----LQKSDGLSTHRS---------------------------SLLNSHLQWLLDNYETAEGVS 229

  Fly   326 IPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSRYCYAAMRKTTKLTPP 390
            :|:..:||.|:.:|:...:.|::.|.|||:::.:|.|:|.|||||||||:|.|..:|     ..|
  Rat   230 LPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIR-----VKP 289

  Fly   391 QLPQLCKTEQIVAGDSNSDPSQLTSASSLGGLPSTGGDSECWDVVRSWAEKLLNTKLESVADLSS 455
            ..|                                                 ||...|.:..::.
  Rat   290 DSP-------------------------------------------------LNRLQEDMQYMAM 305

  Fly   456 RIKSNNATVSTKKYTPREPKEKRVLADIGPLKKRRKKKRK------GSTSSESSCNQLVTGQDAG 514
            |               ::|.::         |:|.|..:|      |.|.|         ||..|
  Rat   306 R---------------QQPMQQ---------KQRYKPMQKVDGVADGFTGS---------GQQTG 337

  Fly   515 SSQEASDEQILKIKQEIIDSPIHPQQPPIGYLQQVTPMNLATDQRSSSAVRNLTPKILEMGSPAV 579
            :|          ::|.:|....|.||    :|               .|.|.|.    |.|
  Rat   338 TS----------VEQTVIAQSQHHQQ----FL---------------DASRALP----EFG---- 365

  Fly   580 VLTQQEVS--PTGIVIKD-------------EVEDYTSNIFCKKVLKAQQTKGFWANSPSS---G 626
               :.|:|  |.|...:|             .:.|...|:....:.|..||  ||..|||:   |
  Rat   366 ---EVEISSLPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQT--FWRYSPSTPTDG 425

  Fly   627 TT-----------------------------------------SGVGLLVPPTITTTSATPPPPN 650
            ||                                         :.|.:|:|..:.      |.|:
  Rat   426 TTITESSNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLR------PIPS 484

  Fly   651 SETSPVPGPGLSM---------GPPSQMMSTSSVSPSSTVDTTPKVASRNQMMILRAKRLMAAEN 706
            :.|..:.....|:         ..|.:|:.|...:.|:...|..:..|.|.:          |:.
  Rat   485 ALTQAIRNFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHL----------AQA 539

  Fly   707 AALAAAEDSGLPENLG-LPR-------ERVISICNMDKHELD----DYFLPGEDEENSEE----P 755
            |.......|.:.:.|. |.|       |:...:|..|.:.:.    |:.:..:.:...|:    .
  Rat   540 ARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWL 604

  Fly   756 DNELLQ 761
            ||.::|
  Rat   605 DNVMMQ 610

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9727	NP_001262317.1	RFX_DNA_binding	307..383	CDD:280427	29/75 (39%)
Rfx3	XP_038940262.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D346630at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010