Protein Alignment CG9727 and Rfx1

DIOPT Version :10

• Sequence 1: NP_001262317.1
• Gene: CG9727 / 40794
• FlyBaseID: FBgn0037445
• Length: 1329
• Species: Drosophila melanogaster
• Sequence 2: NP_001420909.1
• Gene: Rfx1 / 288906
• RGDID: 1306574
• Length: 1074
• Species: Rattus norvegicus
• Alignment Length: 564
• Identity: 119/564 - (21%)
• Similarity: 195/564 - (34%)
• Gaps: 173/564 - (30%)

  Fly    15 SAAPAATTA-----PVSNSIPIPQPIPVALPLQKPNANPYGNCS---LQPADIVYSATRFQGPAI 71
            :..||.|..     .|..|:|:.|...|.....:..|.|....:   |||..:...::..|.||.
  Rat   214 AGTPAGTVQQLQVHSVQQSVPVTQERSVVQATPQTKAGPVQQLTVQGLQPVHVAQESSGSQFPAR 278

  Fly    72 HA-----KGSPLTITPVGPVGGAPA---------SAQISPTSHTHVP-----VPVATPSGFVPPP 117
            .|     :.:|....|..|.|..||         |.|..|.....|.     |.|..|...:|.
  Rat   279 KAEQQETRPTPPPEPPPRPPGPGPACCGEALQLGSEQQPPHYEPGVEQWVELVGVLPPHLLLPQ- 342

  Fly   118 FSNATSASGGVSTSVLTPNPFATASAN----------AAGLAFANAFSFSTAQQLGL-----GKI 167
                       ...|..|.|..:|.|:          ...|.|..|.......|:.:     .::
  Rat   343 -----------QRVVFEPQPGLSARASPDLRVRIHRMPQVLVFGTALKVQQLPQVPVPHVYSSQV 396

  Fly   168 MHAMGG-----------ATAGVPSAPVPVTTTPATAAPSTPTIAGPRHP-NEGVPAASGVINSTI 220
            .:..||           :|...|..|:...|...:...::.|.|....| .....|:||.:...:
  Rat   397 QYVEGGDASYTASAIRSSTYQYPETPIYTQTAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYV 461

  Fly   221 AENVMNALSNSNSAGSVPSEEKMRRVLQVIETSLDDNAKLQISQILERV---------------- 269
            :.:.:.|.|:|:.||:..|.                            |
  Rat   462 SGSPIVASSSSSEAGASNSS----------------------------VGAGGNGGGGSGGGGGG 498

  Fly   270 -SGLKPIEKLFLYLRLPGECADTDPLRQPQNPLGTRSE-INH-------TINWVRSHLEHDAQVS 325
             ||             .|..|.|..: |....||..|: .:|       |:.|:..:.|....||
  Rat   499 SSG-------------GGSGAGTYVI-QGGYMLGNASQSYSHTTRASPATVQWLLDNYETAEGVS 549

  Fly   326 IPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSRYCYAAMRKTTKLTPP 390
            :|:..:|..|:.:|:...::|::.|.|||:::.||.|:|.|||||||||:|.|..:|  .|.:.|
  Rat   550 LPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLR--IKASSP 612

  Fly   391 QLPQLCKTEQIVA--GDSNSDPSQLTSASSLGGL--------PSTGGDSECWDVVRSWAEKLLNT 445
            .| :|.:.:|.:|  |...|...:|.....:.|:        .|||
  Rat   613 LL-RLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQSTG------------------- 657

  Fly   446 KLESVADLSSRIKSNNATVSTKKYTPREPK---EKRVLAD-IGP 485
                ::|:|::::.....:...:..|...:   :.:||.: :||
  Rat   658 ----LSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGP 697

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9727	NP_001262317.1	PHA03247	<40..207	CDD:223021	41/215 (19%)
		RFX_DNA_binding	307..385	CDD:460512	31/84 (37%)
Rfx1	NP_001420909.1	RFX1_trans_act	214..467	CDD:461362	52/264 (20%)
		RFX_DNA_binding	532..609	CDD:460512	30/78 (38%)