Protein Alignment CG9727 and Rfx1

DIOPT Version :10

• Sequence 1: NP_001262317.1
• Gene: CG9727 / 40794
• FlyBaseID: FBgn0037445
• Length: 1329
• Species: Drosophila melanogaster
• Sequence 2: XP_011246631.1
• Gene: Rfx1 / 19724
• MGIID: 105982
• Length: 1073
• Species: Mus musculus
• Alignment Length: 586
• Identity: 117/586 - (19%)
• Similarity: 200/586 - (34%)
• Gaps: 218/586 - (37%)

  Fly    15 SAAPAATTA-----PVSNSIPIPQPIPVALPLQKPNANPYGNCS---LQPADIVYSATRFQGPAI 71
            :..||||..     .|..|:|:.|...|.....:..|.|....:   |||..:...::..|.||.
Mouse   214 AGTPAATVQQLQVHSVQQSVPVTQERSVVQATPQTKAGPVQQLTVQGLQPVHVAQESSGSQFPAR 278

  Fly    72 HA-----KGSPLTITPVGPVGGAPA---------------------------------------- 91
            .|     :.:|....|..|.|..|.
Mouse   279 KAEQQETRPTPPPEPPPRPPGPGPVCCGEVLQLGSEQQPLHYEPGVEQWVELVGMLPPHLLLPQQ 343

  Fly    92 ----------SAQISPTSHT---------------------HVPVP--VATPSGFVPPPFSNATS 123
                      ||:.||....                     .||||  .::...:|....::.|:
Mouse   344 RVVFEPQRGLSARASPDLRVRIHRMPQVLVFGTALKVQQLPQVPVPHVYSSQVQYVEGGDASYTA 408

  Fly   124 ASGGVSTSVLTPNPFATASA-----NAAGLAFANAFSFSTAQQLGLGKIMHAMGGATAGVPSAPV 183
            ::...||......|..|.:|     .|:|.| |...:.:|:|.:           |::|  |.|:
Mouse   409 SAIRSSTYQYPETPIYTQTAGTSYYEASGTA-AQVSTPATSQTV-----------ASSG--SVPM 459

  Fly   184 PVTTTPATAAPSTPTIAGPRHPNEGVPAASGVINSTIAE--NVMNALSNSNSAGSVPSEEKMRRV 246
            .|:.:|..|:.|:              :.:|..||::..  |.....|...|.||..|.
Mouse   460 YVSGSPIVASSSS--------------SEAGASNSSVGAGGNGGGGSSGGGSGGSSGSG------ 504

  Fly   247 LQVIETSLDDNAKLQISQILERVSGLKPIEKLFLYLRLPGECADTDPLRQPQNPLGTRSE-INH- 309
                                   :|...|:..::                    ||..|: .:|
Mouse   505 -----------------------AGTYVIQGGYM--------------------LGNASQSYSHT 526

  Fly   310 ------TINWVRSHLEHDAQVSIPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRL 368
                  |:.|:..:.|....||:|:..:|..|:.:|:...::|::.|.|||:::.||.|:|.|||
Mouse   527 TRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRL 591

  Fly   369 GTRGNSRYCYAAMRKTTKLTPPQLPQLCKTEQIVA--GDSNSDPSQLTSASSLGGL--------P 423
            ||||||:|.|..:|  .|.:.|.| :|.:.:|.:|  |...|...:|.....:.|:        .
Mouse   592 GTRGNSKYHYYGLR--IKASSPLL-RLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVAVGQQ 653

  Fly   424 STGGDSECWDVVRSWAEKLLNTKLESVADLSSRIKSNNATVSTKKYTPREPK---EKRVLAD-IG 484
            |||                       ::|:|::::.....:...:..|...:   :.:||.: :|
Mouse   654 STG-----------------------LSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVG 695

  Fly   485 P 485
            |
Mouse   696 P 696

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG9727	NP_001262317.1	PHA03247	<40..207	CDD:223021	43/252 (17%)
		RFX_DNA_binding	307..385	CDD:460512	31/84 (37%)
Rfx1	XP_011246631.1	RFX1_trans_act	214..467	CDD:461362	50/266 (19%)
		RFX_DNA_binding	531..608	CDD:460512	30/78 (38%)