DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gzl and rnf13

DIOPT Version :9

Sequence 1:NP_001097695.1 Gene:gzl / 40791 FlyBaseID:FBgn0037442 Length:536 Species:Drosophila melanogaster
Sequence 2:NP_957338.1 Gene:rnf13 / 793981 ZFINID:ZDB-GENE-040426-772 Length:377 Species:Danio rerio


Alignment Length:352 Identity:132/352 - (37%)
Similarity:203/352 - (57%) Gaps:47/352 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 EEFNDLPAQFGPNLPSNGLKVYVVPARRPYYGCDSLDRPPHLKYPPSAKFVALVARGECVFERKI 104
            |.|:||||:||..|||.|||.:::.| ||...|..::.||..:...|| |:.|:.|.:|.|:.|:
Zfish    46 ENFDDLPARFGYRLPSEGLKGFLIGA-RPENACVPIEPPPQRENLSSA-FIVLIRRFDCNFDIKV 108

  Fly   105 RVAQNASYSAVIVYNNEGDDLEQMSAEN---ITGIRIPSVFVGHTTGKALATYFTTE----VVLI 162
            ..||.|.|.|.||:|.:.|||..|.:|:   :..|.|||||:|.....:|...:..|    |:|:
Zfish   109 LHAQKAGYKAAIVHNVDSDDLISMGSEDLDILKQIDIPSVFIGEEAANSLKEDYIYEKGGHVILM 173

  Fly   163 INDELPFNINTQLILPFSILIGMCFIIMVIYMIYKCIREQRRLRRHRLPKSMLKKLPVLRYTKNN 227
            .:..||..   ..::||.|::|:|.|::|::||.|.::::.|.||.||.|..|||||:.::.|.:
Zfish   174 PDFSLPLE---YYLIPFLIIVGICLILIVVFMITKFVQDRHRARRSRLRKDQLKKLPIHKFKKGD 235

  Fly   228 ANNKYDTCVICLEDFIEDDKLRVLPCSHPYHTHCIDPWLTENRRVCPICKRKVF-TKGEARASRS 291
            :   ||.|.|||:::.|.::||||||||.||..|:|||||:.::.||:||:||. :.|:   |.|
Zfish   236 S---YDVCAICLDEYEEGERLRVLPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSDGD---SES 294

  Fly   292 RQPSLDNVTDTDD--DTTPLLQQQQSNGRQVGQVSSASSAGGAAGSSSSVAAAAVAGTTRHGTFR 354
            ...|:|:..:.::  :.||||:            |.||::..:.||.|       |..::|    
Zfish   295 DSDSVDSGGEDNEVSENTPLLR------------SLASTSAHSFGSMS-------ASLSQH---- 336

  Fly   355 RGHAGRNPFEE-SQSSDDENALLASTV 380
              .||.:.::| |.|||.|..:...||
Zfish   337 --DAGSSDYDERSDSSDSEEEVTVETV 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gzlNP_001097695.1 PA_C_RZF_like 14..171 CDD:239038 54/137 (39%)
zf-RING_2 233..277 CDD:290367 24/43 (56%)
rnf13NP_957338.1 PA_C_RZF_like 23..180 CDD:239038 53/135 (39%)
zf-RING_2 238..282 CDD:290367 24/43 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8792
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 209 1.000 Inparanoid score I3657
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 1 1.000 - - FOG0001489
OrthoInspector 1 1.000 - - otm25895
orthoMCL 1 0.900 - - OOG6_103040
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1776
SonicParanoid 1 1.000 - - X670
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.900

Return to query results.
Submit another query.