DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIFalpha and gtf2f1

DIOPT Version :9

Sequence 1:NP_524246.1 Gene:TfIIFalpha / 40790 FlyBaseID:FBgn0010282 Length:577 Species:Drosophila melanogaster
Sequence 2:NP_956023.1 Gene:gtf2f1 / 325832 ZFINID:ZDB-GENE-030131-4557 Length:443 Species:Danio rerio


Alignment Length:569 Identity:203/569 - (35%)
Similarity:291/569 - (51%) Gaps:153/569 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ASGSASSSANVQEFKIRVPK-MPKKHHVMRFNATLNVDFAQWRNVKLERENNMKEFRGMEEDQPK 91
            :.||:|||:.  |:.:|||| ..||:.:|.|||...|..:.|...::||:.:.:...|.||.| :
Zfish     6 SQGSSSSSST--EYVVRVPKNTNKKYSIMAFNAGDKVSCSTWTQARMERDMSNRRIYGEEETQ-E 67

  Fly    92 FGAGSEYNRDQREEARRKKFGIIARKYRPEAQPWILKVGGKTGKKFKGIREGGVGENAAFYVFTH 156
            ..||||:.:.|||||||||:|||.::::.|.|||||||.||.|::||||::|||.|||::|:||.
Zfish    68 GAAGSEFGKKQREEARRKKYGIITKEFKVEDQPWILKVSGKAGRRFKGIKKGGVTENASYYIFTQ 132

  Fly   157 APDGAIEAYPLTEWYNFQPIQRYKSLSAEEAEQEFGRRKKVMNYFSLMLRKRLR------GDEEE 215
            :.|||.||:|:..||||.|..::::|:|||||:|:|||.||:|:||:||::|||      |||:|
Zfish   133 SADGAFEAFPVHAWYNFTPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQRRLREQERGGGDEDE 197

  Fly   216 EQDPEEAKLIKAATKKSK-----ELKITDMDEWID-SEDESDSEDEEDKKKKEQEDSDDGKAKG- 273
            |:..      |.|.||.|     :|:|.|::|.:: |.||||..:.:|         |:.|||. 
Zfish   198 EEGE------KGAKKKKKGGRGGDLRIHDLEEDLEMSSDESDGSNGDD---------DEAKAKAK 247

  Fly   274 --KGKKGADKKKKKRDVDDEAFEESDDGDEEGREMDYDTSSSEDEPDPEAKVDKDMKGVAEEDAL 336
              ||.||..|||||:..|.|.||:||                                 .|.:|.
Zfish   248 KEKGAKGKGKKKKKKGSDLEGFEDSD---------------------------------IEGEAA 279

  Fly   337 RKLLTSDEEEDDEKKSDESDKEDADGEKKKKDKGKDEVSKDKKKKKPTKDDKKGKSNGSGDSSTD 401
            ..|.                                     .||:.|   .|:|...||..||..
Zfish   280 SALF-------------------------------------MKKRTP---PKRGGGRGSAGSSRT 304

  Fly   402 FSSDSTDSEDDLSNGPPKKKVVVKDKDKEKEKEKESAASSKVI---ASSSNANKSRSATPTLSTD 463
            .|...|.|.|                         :||:|..:   ||.....|.::..|:..|.
Zfish   305 GSRPGTPSID-------------------------NAATSNTLRAAASKLEQGKRQTTVPSSETP 344

  Fly   464 ASKR-KMNSLPSDLTASDTSNSPTSTPAKRPKNEISTSLPTSFSGGKVEDYGITEEAVRRYLKRK 527
            |:|| ||...|.       |:|..|||  :|.:..||  |::      .|..:||:||||||.||
Zfish   345 AAKRLKMEPSPQ-------SSSGKSTP--QPASGKST--PSA------SDVLLTEDAVRRYLIRK 392

  Fly   528 PLTATELLTKFKNKKTPVSSDRLVETMTKILKKINPVKHTIQGKMYLWI 576
            |:|..:||.||:.|:|.:||::.|..:.:|||::||.:..|..||:.::
Zfish   393 PMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNINDKMHFYL 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIFalphaNP_524246.1 TFIIF_alpha 37..577 CDD:253391 198/560 (35%)
TFIIFa 39..199 CDD:238147 82/160 (51%)
gtf2f1NP_956023.1 TFIIF_alpha 15..443 CDD:253391 198/560 (35%)
TFIIFa 15..175 CDD:238147 82/162 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170581937
Domainoid 1 1.000 357 1.000 Domainoid score I939
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 357 1.000 Inparanoid score I2187
OMA 1 1.010 - - QHG55429
OrthoDB 1 1.010 - - D382179at33208
OrthoFinder 1 1.000 - - FOG0007367
OrthoInspector 1 1.000 - - oto39121
orthoMCL 1 0.900 - - OOG6_106717
Panther 1 1.100 - - LDO PTHR13011
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3664
SonicParanoid 1 1.000 - - X6255
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.940

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