DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIFalpha and otogl2

DIOPT Version :10

Sequence 1:NP_524246.1 Gene:TfIIFalpha / 40790 FlyBaseID:FBgn0010282 Length:577 Species:Drosophila melanogaster
Sequence 2:XP_031761380.1 Gene:otogl2 / 101733689 XenbaseID:XB-GENE-6035211 Length:3475 Species:Xenopus tropicalis


Alignment Length:569 Identity:124/569 - (21%)
Similarity:213/569 - (37%) Gaps:161/569 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SASSSANVQEFKIRVPKMPKKHHVMRFNATL-----NVDFAQWRNVKLEREN-NMKEFRGMEEDQ 89
            |:....||:..:..|....|.....:|:..:     :.:|.: .|||.::.| |..:.:|.::.:
 Frog    87 SSEGKGNVRAKRAAVGVNKKNSAATKFSLGITGTDEDKEFLK-TNVKNDKVNTNQNQGKGHDDSR 150

  Fly    90 PKFGAGSEYNRDQREEARRKKFGIIARKYRPEA--QPWILKVGGKTGKKFKGIREGGVGENAAFY 152
                ..|:.|..::.:...|||...:.:.:.:.  :.|    |.....|....:..|.|.:    
 Frog   151 ----KDSKENSQEKGQENNKKFSKDSSEEKDDGSKEKW----GNVKNDKVNTNQNQGKGHD---- 203

  Fly   153 VFTHAPDGAIEAYPLTEWYNFQPIQRYKSLSAEEAEQEFGRRKKVMNYFSLMLRKRLRGDEEEEQ 217
                  |...::               |..|.|:.:|.               .||...|..||:
 Frog   204 ------DSRKDS---------------KDNSQEKGQQN---------------NKRFSKDSSEEK 232

  Fly   218 DPEEAKLIKAATKKSKELKITDMDEWIDSEDESDSEDEEDKKKKEQEDSDDGKAKGKGKKGADKK 282
            |  .|...|:..||:..:: |..::. ...|:|.||.:|:|             ||:.|.|..| 
 Frog   233 D--NASKEKSTFKKTYSVQ-TSQNQG-KGHDDSSSESKENK-------------KGQNKNGFSK- 279

  Fly   283 KKKRDVDDEAFEESDDGDEE--------------GREMDYDTSSSEDEPDPEAKVDKDMKGVAEE 333
                    ::.||.|||.:|              .:...:|.||||.:   |.|..::..|.:::
 Frog   280 --------DSSEEKDDGSKEKSAFKKTYSVQTSQNQGKGHDDSSSESK---ENKKGQNKNGFSKD 333

  Fly   334 DALRKLLTSDEEEDDEKKSDESDKEDADGEKKKKDKGKDEVSKDKKKKKPTKDDKKGKSNGSG-- 396
                    |.||:||..| ::|.....|..|...:||.|.....|:.|:.| |.:||:.|.:|  
 Frog   334 --------SSEEKDDGSK-EKSGHGKNDKNKPNINKGNDHDDSSKESKENT-DRQKGQKNKNGWL 388

  Fly   397 -DSSTDFSSDSTDSEDDLSNGPPKKKVVVKDKDKEKEKEKESAASSKVIASSSNANKSRSATPTL 460
             :||.:....|.:.|....||..|.|   ::|.|::             ..|||.:||.|.....
 Frog   389 KNSSHEKDDGSKEKEGHWKNGKGKPK---QNKGKDQ-------------GDSSNESKSNSQEKGQ 437

  Fly   461 STDASKRKMNSLPSDLTASDTSN--SPTSTPAKRPK--NEISTSLP------------TSFSGGK 509
            :.|:|...:.::.::.|..:..|  :|:.||....|  .:|||..|            .|.:.|:
 Frog   438 NKDSSVEIVPTVSNENTGDEEDNNVTPSVTPVVEQKRDQDISTDGPEEAVINSCIFNKESIADGE 502

  Fly   510 VEDYGITEEAVRRYLKRKPLTATE-LLTKFKNKKTP----VSSDRLVET 553
            .:|           |.....|..: .||..||...|    |:..:::.|
 Frog   503 TKD-----------LSCSSCTCNKGKLTCMKNLNCPGVCSVTGYQMIRT 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIFalphaNP_524246.1 TFIIF_alpha 37..577 CDD:310411 123/563 (22%)
otogl2XP_031761380.1 DMP1 <79..461 CDD:462128 103/477 (22%)
VWD 530..683 CDD:459671 2/11 (18%)
TIL 894..953 CDD:460351
VWD 983..1134 CDD:214566
C8 1165..1238 CDD:214843
beta-trefoil_ABD_OTOG-like 1250..1392 CDD:467808
PHA03247 <2898..3171 CDD:223021
GHB_like 3354..3436 CDD:473907
Blue background indicates that the domain is not in the aligned region.

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