DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42564 and R3hdml

DIOPT Version :10

Sequence 1:NP_649651.2 Gene:CG42564 / 40788 FlyBaseID:FBgn0260766 Length:500 Species:Drosophila melanogaster
Sequence 2:NP_001102432.1 Gene:R3hdml / 366245 RGDID:1305296 Length:253 Species:Rattus norvegicus


Alignment Length:249 Identity:56/249 - (22%)
Similarity:84/249 - (33%) Gaps:97/249 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 HKELKHVAC---NASIELHDKCSLDAELIVISPKVERFLLRRFNELRDSVAKGGFNGLSPASRMG 123
            |:..:|::.   ||.::.|                        |.:|.||.       .|||.|.
  Rat    52 HRRKRHISARDMNALLDYH------------------------NHIRASVH-------PPASNME 85

  Fly   124 TLKWNPELAYLAEFNVRDCVLRHDECRNTKFT-QNAGQTVG-YRGIKGKLPELEDILRDIIGVWL 186
            .:.|:.:||..||.....|:..|...:.||:. ||.....| ||.:.           |::..|.
  Rat    86 YMVWDEQLARAAEAWATQCIWAHGPSQLTKYVGQNLSVHSGRYRSVV-----------DLVKSWS 139

  Fly   187 REKSRTSMVNIMKYVEQESQSPK---------------YNFLQIVLENAESVGCAI-VQQSRHGW 235
            .||...|.           .:||               .::.|:|..::..:|||| ...|.:.|
  Rat   140 EEKRHYSF-----------PAPKDCTPHCPWLCSGPVCSHYTQMVWASSSRLGCAIHTCSSINVW 193

  Fly   236 IQT-----FFACNY-------GHAPVVGSPVYEPGKKAAESCKTGANPKYAHLC 277
            ..|     :..|||       |.||      |:.||..: :|.    |.|...|
  Rat   194 GSTWQQAVYLVCNYAIKGNWIGEAP------YKTGKPCS-ACP----PSYQGNC 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42564NP_649651.2 CAP_euk 95..245 CDD:349399 41/179 (23%)
R3hdmlNP_001102432.1 CAP_R3HDML 63..208 CDD:349409 43/197 (22%)

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