DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CRAT and crata

DIOPT Version :9

Sequence 1:NP_001287195.1 Gene:CRAT / 40787 FlyBaseID:FBgn0037440 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_001027489.1 Gene:crata / 613081 XenbaseID:XB-GENE-996699 Length:625 Species:Xenopus tropicalis


Alignment Length:625 Identity:229/625 - (36%)
Similarity:371/625 - (59%) Gaps:26/625 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PNGIAKKVLPASSYSTVQKTIP-LEQPNLLKYHVLPLEETLNRFMTTVEPLLTPEEFQRQKGITS 110
            |..:||  || ..|...|:.:| |..|        ||::||::::..::||::.||:...:.:..
 Frog    18 PVSLAK--LP-GRYLAHQEGLPCLPVP--------PLQQTLDKYLLALKPLVSLEEWSLTRVLVE 71

  Fly   111 EF-LKKQGRELQLLLEETGSKEKNWLAHRWLKAAYLTYRDPVTVFVSPGMTFPKQNFRDSRAFVD 174
            :| ....|..||..||....|.:|||:..||:.|||.||.||.|..:||:..|||:|.|.:..:.
 Frog    72 DFRTSGVGERLQKGLERRARKTENWLSEWWLQTAYLEYRMPVVVHSNPGVVLPKQDFEDRQGQLR 136

  Fly   175 YTARVIYGLGEFNDMVHANKIPIVKMGKNELDNSQFGKVFGTCRIPRRGTDEIV-YNPDS---DY 235
            :.|::|.|:.:|..||....:|:..:|...|..:|:.::..:||||....|.:. |:..|   .:
 Frog   137 FAAKLIEGVLDFKTMVDNETLPVEYLGGKPLCMNQYYQMLSSCRIPGPKRDTVANYSQASKPPTH 201

  Fly   236 VVVIYKNHFYQLKIYSKEGKLIAAPCLAAQLENIVLKETQVG-VPYGILTTDSRDNWAEAYEYLV 299
            :.|::...|::|.:|:.:|..:.:..:..|||.|.....|.. .|.|||||:.|::||:||..|:
 Frog   202 ITVVHNFQFFELDVYNSDGTPLTSDQIFTQLEKIWGTSLQTNKEPIGILTTNHRNSWAKAYNNLI 266

  Fly   300 ETPGNRDALKTIQGALFTVSLDEGTILKEGEE--TDELILSLIHGSGSKINSGNRWMDKTIQLVV 362
            :...|:::::|||.::|||.|| ..|.:..::  ..::...::||.||:.||||||.|||:|.:|
 Frog   267 KDKTNKESVRTIQKSIFTVCLD-APIPRVSDDLYQSQVAAQMLHGGGSRWNSGNRWFDKTLQFIV 330

  Fly   363 NPNGNVGFTYEHSPAEGQPIAMMMDYVVQKMKEDPSFGQSGSQDFAPAQKIQFSSSNKSLEKSLN 427
            ..:|:.|..|||:||||.||..::|:||:..|. |...:|........:|::|:.: ..::..:.
 Frog   331 AEDGSCGLVYEHAPAEGPPIVALIDHVVEYTKR-PELIRSPMMPLPMPKKLRFNIT-PEIKNDIE 393

  Fly   428 VAQENVDKLADALQMKVLKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMHSEPPAQYESAHLRI 492
            .|::|::.:...|.:||..|:.|||:|.|.::|.||:|:|:||||::|:|:.:..|.||||.||:
 Frog   394 KAKQNLNIMVHDLDVKVFVFSVFGKNFPKSEKLSPDAFIQLALQLSYYRMYKQVCATYESASLRM 458

  Fly   493 FDGGRTETIRSCSNESLAFSRAMQDPNVTDQERAAKLREAVVSHQTYAKLALQGKGVDRHLLGLK 557
            |..|||:||||.|.:|..|.:||.||:..:||:...||:||.:|:.|..:|:.|..:||||||||
 Frog   459 FRLGRTDTIRSASIDSENFVQAMDDPSKQNQEKVDLLRKAVQAHRAYTDMAINGNAIDRHLLGLK 523

  Fly   558 LMALEHSKPIPEFFKSPGFVKSSHFRMSTSQVATKYDAFMGYGPATDDGYACCYNPRDNDIILAI 622
            |.|:|....:||.|....:..:.||.:|||||..|.|..|.:||...|||..||||.::.|..|:
 Frog   524 LQAIEDLVSMPELFMDTSYAVAMHFNLSTSQVPAKTDCVMCFGPVVPDGYGVCYNPMEDHINFAV 588

  Fly   623 SAWRHCPITDHLKFVKTLEQSFFEMKNVLEKNPPETKSKL 662
            ||:..|..|:..:....||::..:|:.::::.|   ||||
 Frog   589 SAFNSCAETNAARLAHYLERALCDMQQLVQRTP---KSKL 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CRATNP_001287195.1 Carn_acyltransf 74..648 CDD:279140 213/581 (37%)
crataNP_001027489.1 Carn_acyltransf 35..614 CDD:376382 216/589 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 386 1.000 Domainoid score I801
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H598
Inparanoid 1 1.050 393 1.000 Inparanoid score I1933
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 1 1.000 - - FOG0001049
OrthoInspector 1 1.000 - - mtm9520
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2058
SonicParanoid 1 1.000 - - X630
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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