DRSC/TRiP Functional Genomics Resources

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Protein Alignment CRAT and Cpt1c

DIOPT Version :9

Sequence 1:NP_001287195.1 Gene:CRAT / 40787 FlyBaseID:FBgn0037440 Length:662 Species:Drosophila melanogaster
Sequence 2:XP_006229128.1 Gene:Cpt1c / 308579 RGDID:1305384 Length:802 Species:Rattus norvegicus


Alignment Length:664 Identity:184/664 - (27%)
Similarity:305/664 - (45%) Gaps:97/664 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 PNGIAKKVLPASSYSTVQKTIPLEQPNLLKY-HVLP------LEETLNRFMTTVEPLLTPEEFQR 104
            |:|....  |..::..:.:......|.|..: ..||      .:||:.:::.::.|:|..:.|..
  Rat   139 PHGTMSS--PTKTWLALVRIFSGRHPRLFSFQRALPRQPVPGAQETVRKYLESMRPVLRDDAFDS 201

  Fly   105 QKGITSEFLKKQGRELQLLLEETGSKEKNWLAHRWLKAAYLTYRDPVT----------VFVSPGM 159
            ...:.::||:.|...|||.|:.......|:::..|.:..||..|..:.          ::|:|  
  Rat   202 VVALANDFLRLQAPRLQLYLQLKSWCASNYVSDWWEEFVYLRSRGSLVNSTYYMMQDFLYVTP-- 264

  Fly   160 TFPKQNFRDSRAFVDYTARVIYGLGEFNDMVHANKI-PIVKMGKNELDNSQFGKVFGTCRIPRRG 223
             .|.|..|...|        ::.|..:..:::..:| |.:.||...|.::|:.::|.|.|||...
  Rat   265 -TPLQAARAGNA--------VHTLLLYRHLLNRQEIPPTLLMGMRPLCSAQYERMFNTTRIPGVE 320

  Fly   224 TDEIVYNPDSDYVVVIYKNHFYQLKIYSKEGKLIAAPCLAAQLENIVLKETQVGVP----YGILT 284
            .|.:.:..||.:|.|.::..|:::..:|..|.|  :|....|....:|.:.....|    ...||
  Rat   321 KDYLCHLQDSQHVAVFHQGRFFRVGTHSSNGLL--SPRALEQQFQYILDDPSPACPLEEHLAALT 383

  Fly   285 TDSRDNWAEAYEYLVETPGNRDALKTIQGALFTVSLDE--GTILKE--GEETDELILSLIHGSGS 345
            ...|..||:..| .|:|.. ..||:|::||.|.||||.  ..:.:|  ....|....:|:.|.|.
  Rat   384 AAPRSMWAQVRE-SVKTHA-ATALETVEGAAFFVSLDSEPAGLTRENPAASLDTYAHTLLTGQGH 446

  Fly   346 KINSGNRWMDKTIQLVVNPNGNVGFTYEHSPAEGQPIA------------MMMDYVVQ---KMKE 395
                 :||.||:..|:|..||.:|.:.|||.|: .|:|            ..:.|...   |...
  Rat   447 -----DRWFDKSFTLIVFSNGKLGLSVEHSWAD-CPVAGHLWEFTLATECFQLGYATDGHCKGHP 505

  Fly   396 DPSFGQSGSQDFAPAQKIQFSSSNKSLEKSLNVAQENVDKLADALQMKVLKFNGFGKDFIKKQRL 460
            ||:..:        .|::|:... |.::.|:::|......|:..:...|..|..|||.|||...:
  Rat   506 DPALPK--------PQRLQWDLP-KQIQPSISLALRGAKTLSGNIDCHVFPFFHFGKSFIKGCHV 561

  Fly   461 GPDSFVQMALQLAFYKMHSEPPAQYESAHLRIFDGGRTETIRSCSNESLAFSRAMQDPNVTDQER 525
            ..|||:|:.||||.::...:....||||..|:|..|||||:|||:.|:..|.|||::...|||:.
  Rat   562 SSDSFIQLVLQLAHFRDRGQFCLTYESAMTRLFLEGRTETVRSCTREACQFVRAMENKERTDQQC 626

  Fly   526 AAKLREAVVSHQTYAKLALQGKGVDRHLLGLKLMA-LEHSKPIPEFFKSPGF--VKSSHFRMSTS 587
            .|..||||..||...|.|:.|:|:||||..|.:|: |.|       .:||..  |:|..:.:|||
  Rat   627 LALFREAVDKHQALLKAAMSGQGIDRHLFALYIMSRLLH-------MQSPFLTQVQSQQWLLSTS 684

  Fly   588 QVATK---------YDAFM----GYGPATDDGYACCY-NPRDNDIILAISAWRHCPITDHLKFVK 638
            |:..:         |..::    |:|||.|.||...| ...:|.|...||:.:....||..:..:
  Rat   685 QIPVQQTHLFDVHNYPDYVSSGGGFGPAHDHGYGVSYIFMGENAISFHISSKQSSTETDSHRLGQ 749

  Fly   639 TLEQSFFEMKNVLE 652
            .:|.:..::.::.:
  Rat   750 HIEDALLDVASLFQ 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CRATNP_001287195.1 Carn_acyltransf 74..648 CDD:279140 180/631 (29%)
Cpt1cXP_006229128.1 CPT_N 1..46 CDD:293093
Carn_acyltransf 171..758 CDD:279140 179/623 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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