DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CRAT and cha-1

DIOPT Version :9

Sequence 1:NP_001287195.1 Gene:CRAT / 40787 FlyBaseID:FBgn0037440 Length:662 Species:Drosophila melanogaster
Sequence 2:NP_001023603.1 Gene:cha-1 / 24105307 WormBaseID:WBGene00000481 Length:627 Species:Caenorhabditis elegans


Alignment Length:620 Identity:185/620 - (29%)
Similarity:284/620 - (45%) Gaps:56/620 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 LLKYHVLPLEETLNRFM--TTVEPLLTPEEFQRQKGITSEFLKKQGRELQLLLEETGSKEKNWLA 136
            |.|..|..||.||:|::  ..|..:..............:|: :|...||..|.|...|..||..
 Worm    20 LPKPPVPSLEATLDRYLEYAAVVAVGQKASLATTHDAAHKFV-RQATPLQEQLLEIAEKSPNWAT 83

  Fly   137 HRWLKAAYLTYRDPVTVFVSPGMTFPKQNFRDSRAFVDYTARVIYGLGEFNDMVHANKIPIVK-- 199
            ..||...|:..|.|..|..:||..|||..|......:.|||.:..||.|:.:::...::...|  
 Worm    84 KFWLPEMYMRVRMPTPVNSNPGYIFPKVKFETKEDHIKYTALLTRGLLEYKNLIDTKQVCREKST 148

  Fly   200 -MGKNELDNSQFGKVFGTCRIPRRGTDEIV----YNPDSDYVVVIYKNHFYQLKIYSK-EGKLIA 258
             ..|.::...|:.:|....|.|..|.|..:    .|..:::|:|:.:|..:.|  :|: .|.|::
 Worm   149 GAQKLQMCMEQYDRVLSCYREPGVGEDTQIRKQKTNDGNEHVLVMCRNQTFLL--HSRINGALVS 211

  Fly   259 ---APCLAAQLENIVLKETQVGVPYGILTTDSRDNWAEAYEYLVETPGNRDALKTIQGALFTVSL 320
               .....||:|.|...........|......|||.|..::.::....|..:.:.::.|||.|.|
 Worm   212 YADVEYQLAQIEEISKINQNNTANIGASGVGPRDNAALFWQDMLTVEQNSKSYEWVKSALFVVCL 276

  Fly   321 D--------EGTILKEGEETDELI---LSLIHGSGSKINSGNRWMDKTIQLVVNPNGNVGFTYEH 374
            |        :...:...|:..|.:   .|.:.|.||.....|||.|.||||||:.:|..|...||
 Worm   277 DMEDPIDYGKNDTMSISEKEKEFVARGYSTLTGHGSSKFGLNRWYDATIQLVVSSSGVNGLCIEH 341

  Fly   375 SPAEGQPIAMMMDYVVQKMKEDPSFGQSGSQDFAPAQKIQFSSSN---KSL-----EKSLNVAQ- 430
            |.|||..|..|.:..::.           :|.:..::.:.....|   |||     |.|.|:.: 
 Worm   342 STAEGIVIINMAETAIRY-----------AQKYFKSKMVWNDVRNVHPKSLTWHFSENSRNILKK 395

  Fly   431 --ENVDKLADALQMKVLKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMHSEPPAQYESAHLRIF 493
              |..|:||:.|:::||.||.||||.||..|:.||.|:|:.:|||.||.|....:.||||.:|.|
 Worm   396 QAEVFDELANELELEVLIFNEFGKDSIKNWRVSPDGFIQLIMQLAHYKTHGHLVSTYESASVRRF 460

  Fly   494 DGGRTETIRSCSNESLAFSRAMQDPNVTDQERAAKLREAVVSHQTYAKLALQGKGVDRHLLGLKL 558
            ..||.:.||:.:.|:|.:..||.....:.:.:....::||:.........:.|.|||.||..|..
 Worm   461 GAGRVDNIRANTQEALEWVTAMASKKESKERKLELFKKAVLKQVKVTLENISGYGVDNHLCALFC 525

  Fly   559 MALEH----SKPIPEFFKSPGFVKSSHFRMSTSQVATKY---DAFMGYGPATDDGYACCYNPRDN 616
            :|.|.    .:.||..|..|.:.:...|.:|||||.|..   |.::.||....|||.|.||.:.:
 Worm   526 LAREREETTGEDIPSLFLDPLWSEVMRFPLSTSQVTTSLDIPDCYLTYGAVVRDGYGCPYNIQPD 590

  Fly   617 DIILAISAWRHCPITDHLKFVKTLEQSFFEMKNVL 651
            .:|.|.:|:|..|.||...|.|:|..:..::|.:|
 Worm   591 RVIFAPTAFRSDPRTDLQHFKKSLAGAMRDVKELL 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CRATNP_001287195.1 Carn_acyltransf 74..648 CDD:279140 183/615 (30%)
cha-1NP_001023603.1 Carn_acyltransf 20..622 CDD:279140 183/615 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167256at33208
OrthoFinder 1 1.000 - - FOG0001049
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2058
SonicParanoid 1 1.000 - - X630
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.950

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