DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CRAT and Cpt1a

DIOPT Version :9

Sequence 1:NP_001287195.1 Gene:CRAT / 40787 FlyBaseID:FBgn0037440 Length:662 Species:Drosophila melanogaster
Sequence 2:XP_011246904.1 Gene:Cpt1a / 12894 MGIID:1098296 Length:798 Species:Mus musculus


Alignment Length:626 Identity:182/626 - (29%)
Similarity:298/626 - (47%) Gaps:81/626 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 QPNLLKYHVLPLEETLNRFMTTVEPLLTPEEFQRQKGITSEFLKKQGRELQLLLEETGSKEKNWL 135
            |.:|.:..|..:::|::|::.:|.||:...:|||...:..:|....|.:||..|:.......|::
Mouse   193 QTSLPRLPVPAVKDTVSRYLESVRPLMKEGDFQRMTALAQDFAVNLGPKLQWYLKLKSWWATNYV 257

  Fly   136 AHRWLKAAYLTYRDPVTV----------FVSPGMTFPKQNFRDSRAFVDYTARVIYGLGEFNDMV 190
            :..|.:..||..|.|:.|          :::|      .:.:.:||     ...|:.:..:...|
Mouse   258 SDWWEEYIYLRGRGPIMVNSNYYAMEMLYITP------THIQAARA-----GNTIHAILLYRRTV 311

  Fly   191 HANKI-PIVKMGKN-ELDNSQFGKVFGTCRIPRRGTDEIVYNPDSDYVVVIYKNHFYQLKIYSKE 253
            ...:: ||..:|.. .|.::|:.::|.|.|||...||.|.:..||.::||.::..::::.:| .:
Mouse   312 DREELKPIRLLGSTIPLCSAQWERLFNTSRIPGEETDTIQHVKDSRHIVVYHRGRYFKVWLY-HD 375

  Fly   254 GKLIAAPCLAAQLENIV--LKETQVG-VPYGILTTDSRDNWAEAYEYLVETPGNRDALKTIQGAL 315
            |:|:....|..|::.|:  ..|.|.| .....||...|..||:..:.......|:.:|..::.|.
Mouse   376 GRLLRPRELEQQMQQILDDTSEPQPGEAKLAALTAADRVPWAKCRQTYFARGKNKQSLDAVEKAA 440

  Fly   316 FTVSLDEGTILKEG--EETDELIL-----SLIHGSGSKINSGNRWMDKTIQLVVNPNGNVGFTYE 373
            |.|:|||.   ::|  ||..|..:     ||:||     ...:||.||:|..||..|..:|...|
Mouse   441 FFVTLDES---EQGYREEDPEASIDSYAKSLLHG-----RCFDRWFDKSITFVVFKNSKIGINAE 497

  Fly   374 HSPAEGQPIAMMMDYVVQKMKEDPSFGQSG------SQDFAPAQKIQF---SSSNKSLEKSLNVA 429
            ||.|:...:..:.:||:........:.:.|      :.:.....::|:   ....:.:|.||:.|
Mouse   498 HSWADAPIVGHLWEYVMATDVFQLGYSEDGHCKGDKNPNIPKPTRLQWDIPGECQEVIETSLSSA 562

  Fly   430 QENVDKLADALQMKVLKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMHSEPPAQYESAHLRIFD 494
                ..||:.:.:....|:.|||..|||.|..||:|:|:|||||.||...:....||::..|:|.
Mouse   563 ----SFLANDVDLHSFPFDTFGKGLIKKCRTSPDAFIQLALQLAHYKDMGKFCLTYEASMTRLFR 623

  Fly   495 GGRTETIRSCSNESLAFSRAMQDPNVTDQERAAKLREAVVSHQTYAKLALQGKGVDRHLLGL--- 556
            .|||||:|||:.||..|..||.||..|.::|....:.|...||...:||:.|.|:||||..|   
Mouse   624 EGRTETVRSCTTESCNFVLAMMDPTTTAEQRFKLFKIACEKHQHLYRLAMTGAGIDRHLFCLYVV 688

  Fly   557 -KLMALEHSKPIPEFFKSPGFVKSSHFRMSTSQVA---------TKYDAFM----GYGPATDDGY 607
             |.:|::     ..|.|.   |.|..:|:||||..         .||..::    |:||..||||
Mouse   689 SKYLAVD-----SPFLKE---VLSEPWRLSTSQTPQQQVELFDFEKYPDYVSCGGGFGPVADDGY 745

  Fly   608 ACCY-NPRDNDIILAISAWRHCPITDHLKFVKTLEQSFFEM 647
            ...| ...:|.|...||:....|.||..:|.|.|.|:..::
Mouse   746 GVSYIIVGENFIHFHISSKFSSPETDSHRFGKHLRQAMMDI 786

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CRATNP_001287195.1 Carn_acyltransf 74..648 CDD:279140 181/623 (29%)
Cpt1aXP_011246904.1 CPT_N 26..71 CDD:374569
Carn_acyltransf 196..786 CDD:376382 181/621 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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