DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and hnf4a

DIOPT Version :9

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:XP_021325423.1 Gene:hnf4a / 322358 ZFINID:ZDB-GENE-030131-1077 Length:470 Species:Danio rerio


Alignment Length:310 Identity:93/310 - (30%)
Similarity:140/310 - (45%) Gaps:83/310 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            ||:|||:::|||||.|.||||..||:||||:...|:| .....|:|||.:||.|..||.::|...
Zfish    62 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC-RFNRQCIVDKDKRNQCRYCRLKKCFRA 125

  Fly    72 GM-----NAAAVQEERGPRNQQVALYRTGRRQAPPSQAAPSPTPHSQA--LHFQILA--QILVTC 127
            ||     :::|||.||    .:::.    ||.:....:.||.....||  |..||.:  .||...
Zfish   126 GMKKEVISSSAVQNER----DRIST----RRSSYEDSSLPSINALIQADVLSRQISSPGPILNGD 182

  Fly   128 LRQAKANEQFALLDRCQ---QDAIFQVVWS-------------EIFVLRA---SHWSL------- 166
            :|..|.   .|::|.|:   |..:..|.|:             ::.:|||   .|..|       
Zfish   183 IRTKKV---AAIMDVCESMKQQLLVLVEWAKYIPAFCDLPLDDQVALLRAHAGEHLLLGAAKRSM 244

  Fly   167 ---DISAMIDGCGDEQLKRLICEAHQLRADVLELNFMESLILCRKELAI-NAEYAVI-------- 219
               ||..:    |::.:....|.  :|....:.:..::.|:|..::|.| :.|||.:        
Zfish   245 MYKDILLL----GNDHIIPRNCP--ELEVSRVAVRILDELVLPFQDLQIDDNEYACLKAIVFFDP 303

  Fly   220 ----LGSHSKAALISLARYTLQQS--NYL---------RFGQLLLGLRQL 254
                |...||   |...||.:|.|  :|:         |||:|||.|..|
Zfish   304 DAKGLSDPSK---IKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPTL 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 40/85 (47%)
hnf4aXP_021325423.1 NR_DBD_HNF4A 62..142 CDD:143518 40/84 (48%)
NR_LBD_HNF4_like 158..379 CDD:132729 50/205 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577480
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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