Protein Alignment Hr83 and usp

DIOPT Version :9

• Sequence 1: NP_649647.1
• Gene: Hr83 / 40783
• FlyBaseID: FBgn0037436
• Length: 278
• Species: Drosophila melanogaster
• Sequence 2: NP_001259168.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Alignment Length: 380
• Identity: 94/380 - (24%)
• Similarity: 136/380 - (35%)
• Gaps: 141/380 - (37%)

  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            |::|||::|||||||..|:||..||||:||:..:||| ....||::||.:||.|..||:|:||..
  Fly   104 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYAC-RENRNCIIDKRQRNRCQYCRYQKCLTC 167

  Fly    72 GMNAAAVQEE--RGPRNQQVALYRTGRRQAPPSQAAPSPTP------------------------ 110
            ||...|||||  ||.||....|..:|...:.|.....|.:.
  Fly   168 GMKREAVQEERQRGARNAAGRLSASGGGSSGPGSVGGSSSQGGGGGGGVSGGMGSGNGSDDFMTN 232

  Fly   111 ----------------------HSQALHF---------------------QILAQILVTCLRQAK 132
                                  ..:||.|                     |::.:.|...:..|:
  Fly   233 SVSRDFSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYAR 297

  Fly   133 ANEQFALLDRCQQDAIFQVVWSEIFVLRASHW----SLD-------------------------- 167
            ....||.:....|..:.:..|.|:.:...: |    |||
  Fly   298 MMPHFAQVPLDDQVILLKAAWIELLIANVA-WCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQP 361

  Fly   168 ----------------ISAMIDGCGDEQLKRLICEAHQLRADVLELNFMESLILCRKELAINAEY 216
                            |.|.:....|..|..|..:..:|..|..||:.::::||...:
  Fly   362 QQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPD------- 419

  Fly   217 AVILGSHSKAALISLAR---YT-LQQSNYL-------RFGQLLL---GLRQLCLR 257
              |.|..|:|. |.:.|   |. |.:...|       ||.||||   .||.:.|:
  Fly   420 --IRGIKSRAE-IEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLK 471

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr83	NP_649647.1	NR_DBD_PNR_like_2	7..88	CDD:143515	46/82 (56%)
usp	NP_001259168.1	NR_DBD_RXR	102..178	CDD:143514	41/74 (55%)
		NR_LBD_RXR_like	237..480	CDD:132741	44/246 (18%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45444772
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR24083
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.940