DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and rxrbb

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_571313.1 Gene:rxrbb / 30486 ZFINID:ZDB-GENE-990415-242 Length:422 Species:Danio rerio


Alignment Length:325 Identity:94/325 - (28%)
Similarity:138/325 - (42%) Gaps:81/325 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSNFSACAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGN--CVVDKARRNWCPSC 63
            :|....||:|||:||||||||..|:||..||||:||:..||.|   ..|  |:|||.:||.|..|
Zfish    84 LSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTC---RDNKECLVDKRQRNRCQYC 145

  Fly    64 RFQRCLAVGMNAAAVQEERGPRNQQVALYR---TGRRQAPPSQ--AAPSPTPHSQALH------- 116
            |:|:|||:||...||||||....::...|.   :...:.|..:  .|.:...|...||       
Zfish   146 RYQKCLAMGMKREAVQEERQKNKERDGDYECSSSANEEMPVEKILEAETAVEHRTDLHSDATGSP 210

  Fly   117 -------FQILAQILVTCLRQAKANEQFALLDRCQQDAIFQVVWSEIFVLRASHWSLDI------ 168
                   .|...:.|.|.:..||....|:.:....|..:.:..|:|:.:...||.|:.:      
Zfish   211 NDPVTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEILL 275

  Fly   169 --------------------------SAMIDGCGDEQLKRLICEAHQLRADVLELNFMESLILCR 207
                                      ||.:....|..|..|:|:...::.|..||..:.:::|..
Zfish   276 ATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAIVLFN 340

  Fly   208 ---KELAINAEYAVI-------LGSHSKAALISLARYTLQQSNYLRFGQLLLGLRQL------CL 256
               |.|..::|..::       |.|:.|      .:|..||.   ||.:|||.|..|      ||
Zfish   341 PDAKGLTSSSEVELLREKVYASLESYCK------QKYPDQQG---RFAKLLLRLPALRSIGLKCL 396

  Fly   257  256
            Zfish   397  396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 47/82 (57%)
rxrbbNP_571313.1 Modulating. /evidence=ECO:0000250 1..89 1/4 (25%)
Nuc_recep-AF1 <21..77 CDD:463363
NR_DBD_RXR 89..164 CDD:143514 45/77 (58%)
Hinge. /evidence=ECO:0000250 156..178 7/21 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..182 5/20 (25%)
NR_LBD_RXR_like 183..403 CDD:132741 45/223 (20%)
Blue background indicates that the domain is not in the aligned region.

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