DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr83 and rxrga

DIOPT Version :10

Sequence 1:NP_649647.1 Gene:Hr83 / 40783 FlyBaseID:FBgn0037436 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_571292.3 Gene:rxrga / 30464 ZFINID:ZDB-GENE-980526-36 Length:441 Species:Danio rerio


Alignment Length:324 Identity:92/324 - (28%)
Similarity:141/324 - (43%) Gaps:74/324 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSCRFQRCLAV 71
            ||:|||:||||||||..|:||..||||::|:..:|.| ....:|.:||.:||.|..||:|:|||:
Zfish   117 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTC-RDNKDCQIDKRQRNRCQYCRYQKCLAM 180

  Fly    72 GMNAAAVQEERGPRNQQVALYRTGR----RQAPPSQAAPSPTPHSQALHFQILAQIL-------- 124
            ||...||||||          :.||    .:...|.:.....|..:.|..::..:..        
Zfish   181 GMKREAVQEER----------QRGRERSDNEVDSSSSFNEEMPVEKILDAELAVEPKTEAYMESS 235

  Fly   125 --------VTCLRQAKANEQFALLDRCQQDAIF-------QVV-----WSEIFVLRASHWSLDI- 168
                    ||.:.||...:.|.|::..::...|       ||:     |:|:.:...||.|:.: 
Zfish   236 MSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVK 300

  Fly   169 --------------SAMIDGCG---DEQLKRLICEAHQLRADVLELNFMESLILCR---KELAIN 213
                          ||...|.|   |..|..|:.:..:::.|..||..:.:::|..   |.|:..
Zfish   301 DGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMREMQMDKTELGCLRAIVLFNPDAKGLSNP 365

  Fly   214 AEYAVILGSHSKAALISLARYTLQQSNYL----RFGQLLLGLRQLCLRRFDCALSCMFRSVVRD 273
            :|...:    .:....||..||  :.||.    ||.:|||.|..|......|.....|..::.|
Zfish   366 SEVEAL----REKVYASLEGYT--KHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr83NP_649647.1 NR_DBD_PNR_like_2 7..88 CDD:143515 43/80 (54%)
rxrgaNP_571292.3 Modulating. /evidence=ECO:0000250 1..116
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 16..37
Nuc_recep-AF1 <40..112 CDD:463363
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 56..94
NR_DBD_RXR 115..191 CDD:143514 41/74 (55%)
Hinge 183..206 8/32 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 188..210 7/31 (23%)
NR_LBD_RXR_like 211..419 CDD:132741 45/213 (21%)
Blue background indicates that the domain is not in the aligned region.

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