Protein Alignment Hr83 and Rxra

DIOPT Version :9

• Sequence 1: NP_649647.1
• Gene: Hr83 / 40783
• FlyBaseID: FBgn0037436
• Length: 278
• Species: Drosophila melanogaster
• Sequence 2: XP_038960270.1
• Gene: Rxra / 25271
• RGDID: 3610
• Length: 507
• Species: Rattus norvegicus
• Alignment Length: 325
• Identity: 95/325 - (29%)
• Similarity: 143/325 - (44%)
• Gaps: 59/325 - (18%)

  Fly     1 MSNFS--ACAVCGDQSSGKHYGVSCCDGCSCFFKRSVRRGSSYACIALVGNCVVDKARRNWCPSC 63
            ||:|:  .||:|||:||||||||..|:||..||||:||:..:|.| ....:|::||.:||.|..|
  Rat   172 MSSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTC-RDNKDCLIDKRQRNRCQYC 235

  Fly    64 RFQRCLAVGMNAAAVQEER---GPRNQQVALYRTGRRQAPP------SQAAPSP----------- 108
            |:|:|||:||...||||||   ..||:......:...:..|      ::.|..|
  Rat   236 RYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANMG 300

  Fly   109 ----TPHSQALHF-QILAQILVTCLRQAKANEQFALLDRCQQDAIFQVVWSEIFVLRASHWSLDI 168
                :|:....:. |...:.|.|.:..||....|:.|....|..:.:..|:|:.:...||.|:.:
  Rat   301 LNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAV 365

  Fly   169 ---------------SAMIDGCG---DEQLKRLICEAHQLRADVLELNFMESLILCR---KELAI 212
                           ||...|.|   |..|..|:.:...::.|..||..:.:::|..   |.|:.
  Rat   366 KDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSN 430

  Fly   213 NAEYAVILGSHSKAALISLARYTL----QQSNYLRFGQLLLGLRQLCLRRFDCALSCMFRSVVRD 273
            .||...:    .:....||..|..    :|..  ||.:|||.|..|......|.....|..::.|
  Rat   431 PAEVEAL----REKVYASLEAYCKHKYPEQPG--RFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 489

  Fly   274  273
              Rat   490  489

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr83	NP_649647.1	NR_DBD_PNR_like_2	7..88	CDD:143515	46/83 (55%)
Rxra	XP_038960270.1	Nuc_recep-AF1	58..171	CDD:403126
		NR_DBD_RXR	178..254	CDD:143514	42/76 (55%)
		NR_LBD_RXR_like	274..485	CDD:132741	45/216 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166338110
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.840